VDotplot: Dot plot for short sequence

In mrb20045/CaSilico: In silico crRNA design for different CRISPR-Cas subtypes

Dot plot for short sequence

Description

Dot plot for short sequence

Usage

VDotplot(
  sequence1,
  sequence2,
  wsize = 1,
  wstep = 1,
  nmatch = 1,
  table_col = "goldenrod1",
  points_col = "red",
  xlab = "sequence1",
  ylab = "sequence2"
)

Arguments

sequence1	First sequence
sequence2	Second sequence
wsize	the Size in chars of the moving window.
wstep	the Size in chars for the steps of the moving window. Use wstep == wsize for non-overlapping windows.
nmatch	If the number of match per window is greater than or equal to nmatch, then a dot is produced.
table_col	Table color by default table_col = "goldenrod1".
points_col	Point color by default points_col = "red".
xlab	Label for x axis.
ylab	Label for y axis.

Value

plots.

References

...

Further details

In order to visualize this function better, short sequences are recommended. ...

mrb20045/CaSilico documentation built on Nov. 1, 2023, 10:34 a.m.