API for mrc-ide/MIPanalyzer
Filtering and analysis of MIP data
| Global functions | |
|---|---|
| .onUnload | Source code |
| MIPanalyzer | Man page |
| MIPanalyzer-package | Man page |
| Pf_chrom_lengths | Man page Source code |
| assert_2d | Source code |
| assert_atomic | Source code |
| assert_bounded | Source code |
| assert_custom_class | Source code |
| assert_dataframe | Source code |
| assert_decreasing | Source code |
| assert_dim | Source code |
| assert_eq | Source code |
| assert_file_exists | Source code |
| assert_gr | Source code |
| assert_greq | Source code |
| assert_in | Source code |
| assert_increasing | Source code |
| assert_int | Source code |
| assert_le | Source code |
| assert_length | Source code |
| assert_leq | Source code |
| assert_limit | Source code |
| assert_list | Source code |
| assert_logical | Source code |
| assert_matrix | Source code |
| assert_ncol | Source code |
| assert_neq | Source code |
| assert_noduplicates | Source code |
| assert_non_null | Source code |
| assert_not_in | Source code |
| assert_nrow | Source code |
| assert_null | Source code |
| assert_numeric | Source code |
| assert_pos | Source code |
| assert_pos_int | Source code |
| assert_same_length | Source code |
| assert_same_length_multiple | Source code |
| assert_single | Source code |
| assert_single_bounded | Source code |
| assert_single_int | Source code |
| assert_single_logical | Source code |
| assert_single_numeric | Source code |
| assert_single_pos | Source code |
| assert_single_pos_int | Source code |
| assert_single_string | Source code |
| assert_square_matrix | Source code |
| assert_string | Source code |
| assert_symmetric_matrix | Source code |
| assert_vector | Source code |
| check_MIPanalyzer_loaded | Man page Source code |
| explore_filter_coverage_loci | Man page Source code |
| explore_filter_coverage_samples | Man page Source code |
| filter_counts | Man page Source code |
| filter_coverage_loci | Man page Source code |
| filter_coverage_samples | Man page Source code |
| filter_loci | Man page Source code |
| filter_loci_invariant | Man page Source code |
| filter_overcounts | Man page Source code |
| filter_samples | Man page Source code |
| filter_wsaf | Man page Source code |
| get_IBS_distance | Man page Source code |
| get_IB_mixture | Man page Source code |
| get_genomic_distance | Man page Source code |
| get_spatial_distance | Man page Source code |
| get_wsaf | Man page Source code |
| geweke_pvalue | Source code |
| inbreeding_mle | Man page Source code |
| inbreeding_mle_cpp | Source code |
| is.mipanalyzer_biallelic | Man page Source code |
| is.mipanalyzer_multiallelic | Man page Source code |
| log_sum | Source code |
| lonlat_to_bearing | Man page Source code |
| mat_to_rcpp | Source code |
| mipanalyzer_biallelic_to_vcfR | Man page Source code |
| mipanalyzer_file | Man page Source code |
| nice_format | Source code |
| pca_wsaf | Man page Source code |
| pcoa_genomic_distance | Man page Source code |
| plot_coverage | Man page Source code |
| plot_distance | Man page Source code |
| plot_map | Man page Source code |
| plot_pca | Man page Source code |
| plot_pca_contribution | Man page Source code |
| plot_pca_variance | Man page Source code |
| plot_pcoa | Man page Source code |
| plot_wsaf | Man page Source code |
| print.mipanalyzer_biallelic | Man page Source code |
| print.mipanalyzer_multiallelic | Man page Source code |
| quantile_95 | Source code |
| rbetabinom | Man page Source code |
| rcpp_to_array | Source code |
| rcpp_to_mat | Source code |
| rdirichlet | Man page Source code |
| sim_biallelic | Man page Source code |
| summary.mipanalyzer_biallelic | Man page Source code |
| summary.mipanalyzer_multiallelic | Man page Source code |
| test_convergence | Source code |
| update_progress | Source code |
| vcf_to_mipanalyzer_biallelic | Man page Source code |
| vcf_to_mipanalyzer_multiallelic | Man page Source code |
