get_genomic_distance: Get genomic distance between samples
In mrc-ide/MIPanalyzer: Filtering and analysis of MIP data
View source: R/analysis_distance.R
get_genomic_distance R Documentation
Get genomic distance between samples
Description
Get genomic distance between samples using a distance metric
that allows for mixed infections and takes account of linkage (see
references for details).
Usage
get_genomic_distance(x, cutoff = 0.1, report_progress = TRUE)
Arguments
x
object of class mipanalyzer_biallelic.
cutoff
when calculating weights, correlations below this value are
ignored (see references).
report_progress
if TRUE then a progress bar is printed to the
console.
References
MalariaGEN Plasmodium falciparum Community Project. "Genomic
epidemiology of artemisinin resistant malaria". eLIFE (2016).
mrc-ide/MIPanalyzer documentation built on Jan. 17, 2024, 7:16 p.m.
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View source: R/analysis_distance.R
| get_genomic_distance | R Documentation |
Get genomic distance between samples
Description
Get genomic distance between samples using a distance metric that allows for mixed infections and takes account of linkage (see references for details).
Usage
get_genomic_distance(x, cutoff = 0.1, report_progress = TRUE)
Arguments
x |
object of class |
cutoff |
when calculating weights, correlations below this value are ignored (see references). |
report_progress |
if |
References
MalariaGEN Plasmodium falciparum Community Project. "Genomic epidemiology of artemisinin resistant malaria". eLIFE (2016).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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