sample_chains: Sample chains to produce valid parameter solution space

In mrc-ide/MissingCases: Uses next generation matrices to estimate numbers of missing cases in an epidemic linelist

Sample chains to produce valid parameter solution space

Description

Sample chains to produce valid parameter solution space

Usage

sample_chains(
  n_iter,
  r1,
  r2,
  xmin_pi = 0,
  xmax_pi = 1,
  xmin_2 = 0,
  xmax_2 = 1,
  alpha = FALSE,
  gamma = FALSE
)

Arguments

n_iter	Number of iterations
r1	Ratio of cases not under surveillance (but contact traced) versus the cases under surveillance
r2	Ratio of de novo cases verses detected cases under surveillance
xmin_pi	Minimum value of uniform parameter scaling
xmax_pi	Maximum value of uniform parameter scaling
xmin_2	Minimum value of uniform parameter scaling
xmax_2	Maximum value of uniform parameter scaling
alpha	Flag for if want to sample alpha or phi
gamma	Flag for if want to gamma alpha or pi

Value

List of parameter chains

Examples

sample_chains(10, 0.5, 3)

mrc-ide/MissingCases documentation built on Sept. 14, 2022, 6:49 a.m.