knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "man/figures/README-", out.width = "100%" )
ZikaModel
is an R package for running the Zika transmission model
developed at Imperial College London using R odin.
The transmission model is a metapopulation model which includes the dynamics of the Aedes aegypti mosquito vector and the age-stratified human host populations. The model which has a stochastic and a deterministic version, simulates also the effect of seasonality and the impact of control strategies, such as the release of Wolbachia-infected mosquitoes and child vaccination.
For details of the original transmission model please see the original article where the model is published.
You need to first install the odin R package.
Once odin is installed, you can install the ZikaModel
package with the
following steps:
devtools
, if you don't already have itinstall.packages("devtools") library(devtools)
ZikaModel
packagedevtools::install_github("lorecatta/ZikaModel")
library(ZikaModel)
Check out this vignette on how to run the deterministic base version of the model.
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