Files in mrc-ide/ZikaModel
Zika odin model
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/aggregate.R
R/assertions.R
R/check.R
R/data.R
R/format_output.R
R/incidence.R
R/microcephaly.R
R/models.R
R/object.R
R/odin.R
R/parameters.R
R/run.R
R/utils.R
R/zzz.R
README.Rmd
README.md
ZikaModel.Rproj
_pkgdown.yml
codecov.yml
data-raw/DATASET.R
data-raw/age_specific_birth_rates_Brazil.csv
data-raw/amplitudes_phases.csv
data-raw/hay_et_al_2018/test_1_multivariate_chain.csv
data-raw/hay_et_al_2018/test_2_multivariate_chain.csv
data-raw/hay_et_al_2018/test_3_multivariate_chain.csv
data-raw/nn_links.txt
data/amplitudes_phases.rda
data/br_brazil_age.rda
data/mc_prob_ZIKV_pregn.rda
data/nn_links.rda
inst/odin/odin_model_determ.R
inst/odin/odin_model_determ.json
inst/odin/odin_model_stoch.R
inst/odin/odin_model_stoch.json
man/amplitudes_phases.Rd
man/br_brazil_age.Rd
man/calculate_incidence.Rd
man/calculate_mean_of_patch_variables.Rd
man/calculate_microcases.Rd
man/calculate_microcases_ZIKV.Rd
man/calculate_microcases_baseline.Rd
man/cumsum_across_array_dims.Rd
man/default_demographics.Rd
man/deterministic_model.Rd
man/equilibrium_init_create.Rd
man/format_output_H.Rd
man/format_output_M.Rd
man/format_output_Mprop.Rd
man/lag_diff.Rd
man/lag_diff_array.Rd
man/mc_prob_ZIKV_pregn.Rd
man/nn_links.Rd
man/parameters_deterministic_model.Rd
man/plot.Zika_model_simulation.Rd
man/run_deterministic_model.Rd
man/sum_across_array_dims.Rd
src/odin.c
src/registration.c
tests/testthat.R
tests/testthat/test-output.R
tests/testthat/test-run.R
vignettes/.gitignore
vignettes/deterministic_base.Rmd
vignettes/deterministic_generalControl.Rmd
vignettes/deterministic_seasonal.Rmd
vignettes/patch_structure.png
