Files in mrc-ide/epihawkes

Hawkes Processes model for outbreak analysis

R/conditional_intensities.R R/exp_derivatives.R R/kernels.R R/log_likelihood.R R/logger.R R/mu.R R/mu_derivatives.R R/plots.R R/ray_derivatives.R R/ray_hessian.R R/simulation.R R/utils.R README.md man/all_roots.Rd man/compute_count_function.Rd man/compute_integral_limits.Rd man/compute_intensity_function.Rd man/compute_lambda.Rd man/compute_ray_deriv_delta.Rd man/conditional_intensity.Rd man/conditional_intensity_list.Rd man/exp_derivatives.Rd man/exp_kernel.Rd man/find_zero_mu_sinusoidal_linear_turning_points.Rd man/find_zero_mu_turning_points.Rd man/hawkes_simulation.Rd man/int_exp.Rd man/int_ray.Rd man/integral_intensity.Rd man/max_lambda.Rd man/max_mu.Rd man/mu_constant.Rd man/mu_diff_constant.Rd man/mu_diff_linear.Rd man/mu_diff_none.Rd man/mu_diff_quadratic.Rd man/mu_diff_sinusoidal.Rd man/mu_diff_sinusoidal_constant.Rd man/mu_diff_sinusoidal_linear.Rd man/mu_diff_sinusoidal_linear_period.Rd man/mu_int_constant.Rd man/mu_int_linear.Rd man/mu_int_none.Rd man/mu_int_quadratic.Rd man/mu_int_sinusoidal.Rd man/mu_int_sinusoidal_constant.Rd man/mu_int_sinusoidal_linear.Rd man/mu_int_sinusoidal_linear_period.Rd man/mu_linear.Rd man/mu_none.Rd man/mu_quadratic.Rd man/mu_sinusoidal.Rd man/mu_sinusoidal_constant.Rd man/mu_sinusoidal_linear.Rd man/mu_sinusoidal_linear_period.Rd man/neg_log_likelihood.Rd man/plot_decay_kernel.Rd man/plot_events.Rd man/plot_intensity.Rd man/plot_intensity_imported.Rd man/print_message.Rd man/ray_derivatives.Rd man/ray_hessian.Rd man/ray_kernel.Rd man/simulate_next_event.Rd tests/testthat.R tests/testthat/test-conditional-intensities.R tests/testthat/test-exp-derivatives.R tests/testthat/test-kernels.R tests/testthat/test-loglikelihood.R tests/testthat/test-mu-derivatives.R tests/testthat/test-mu.R tests/testthat/test-ray-derivatives.R tests/testthat/test-ray-hessian.R tests/testthat/test-simulation.R tests/testthat/test-utils.R vignettes/fitting.Rmd vignettes/simulation.Rmd