Files in mrc-ide/hintr

R API for calling naomi district level HIV model

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/R-integration-test.yaml

.github/workflows/docker.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

.hadolint.yml

.lintr

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/adr_metadata.R R/api.R R/cache.R R/calibrate.R R/columns.R R/common.R R/debug.R R/downloads.R R/endpoints.R R/filters.R R/indicators.R R/json.R R/main.R R/metadata.R R/migrations.R R/model_options.R R/payload_helpers.R R/pjnz.R R/prerun.R R/queue.R R/read_data.R R/rehydrate.R R/run_model.R

R/sysdata.rda

R/time_series.R R/upload.R R/utils.R R/validate_inputs.R R/validation_asserts.R R/version.R R/zzz.R README.md

README.md.in

README.yml

docker/Dockerfile

docker/bin/hintr_api

docker/bin/hintr_prerun_import

docker/bin/hintr_stop

docker/bin/hintr_stop_workers

docker/bin/hintr_worker

docker/bin/install_packages

docker/bin/install_remote

docker/bin/test_self

docker/build

docker/clear_docker

docker/common

docker/coverage

docker/push

docker/start_containers

docker/test_check

docker/test_connection

docker/test_integration

hintr.Rproj

inst/comparison_plot_mock.rds

inst/payload/README.md

inst/payload/model_calibrate_payload.json

inst/payload/model_run_options_payload.json

inst/payload/model_submit_payload.json

inst/payload/model_submit_payload_minimal.json

inst/payload/spectrum_download_notes_payload.json

inst/payload/spectrum_download_state_payload.json

inst/payload/validate_anc_payload.json

inst/payload/validate_baseline_payload.json

inst/payload/validate_options_payload.json

inst/payload/validate_pjnz_payload.json

inst/payload/validate_population_payload.json

inst/payload/validate_programme_payload.json

inst/payload/validate_shape_payload.json

inst/payload/validate_survey_payload.json

inst/payload/validate_vmmc_payload.json

inst/schema/AdrMetadataResponse.schema.json

inst/schema/AncDataRow.schema.json

inst/schema/AncFilters.schema.json

inst/schema/AncResponseData.schema.json

inst/schema/BarchartDefaults.schema.json

inst/schema/BarchartIndicator.schema.json

inst/schema/BarchartMetadata.schema.json

inst/schema/CalibrateDataResponse.schema.json

inst/schema/CalibrateMetadataResponse.schema.json

inst/schema/CalibratePlotData.schema.json

inst/schema/CalibratePlotResponse.schema.json

inst/schema/CalibratePlotRow.schema.json

inst/schema/CalibrateResultPathResponse.schema.json

inst/schema/CalibrateResultResponse.schema.json

inst/schema/CalibrateStatusResponse.schema.json

inst/schema/CalibrateSubmitRequest.schema.json

inst/schema/CalibrateSubmitResponse.schema.json

inst/schema/ChoroplethIndicatorMetadata.schema.json

inst/schema/ChoroplethMetadata.schema.json

inst/schema/Column.schema.json

inst/schema/ColumnValues.schema.json

inst/schema/ComparisonBarchartMetadata.schema.json

inst/schema/ComparisonPlotData.schema.json

inst/schema/ComparisonPlotResponse.schema.json

inst/schema/ComparisonPlotRow.schema.json

inst/schema/DownloadStatusResponse.schema.json

inst/schema/DownloadSubmitRequest.schema.json

inst/schema/DownloadSubmitResponse.schema.json

inst/schema/Error.schema.json

inst/schema/ErrorCode.schema.json

inst/schema/File.schema.json

inst/schema/FileName.schema.json

inst/schema/FilePath.schema.json

inst/schema/Filter.schema.json

inst/schema/FilterOption.schema.json

inst/schema/HintrVersionResponse.schema.json

inst/schema/HintrWorkerStatus.schema.json

inst/schema/InputDatasets.schema.json

inst/schema/InputTimeSeriesData.schema.json

inst/schema/InputTimeSeriesDefaults.schema.json

inst/schema/InputTimeSeriesMetadata.schema.json

inst/schema/InputTimeSeriesRequest.schema.json

inst/schema/InputTimeSeriesResponse.schema.json

inst/schema/InputTimeSeriesRow.schema.json

inst/schema/InputType.schema.json

inst/schema/LevelLabels.schema.json

inst/schema/ModelCalibrateRequest.schema.json

inst/schema/ModelCancelResponse.schema.json

inst/schema/ModelOptionsValidate.schema.json

inst/schema/ModelOptionsValidateRequest.schema.json

inst/schema/ModelResultData.schema.json

inst/schema/ModelResultResponse.schema.json

inst/schema/ModelResultRow.schema.json

inst/schema/ModelRunOptions.schema.json

inst/schema/ModelRunOptionsRequest.schema.json

inst/schema/ModelStatusResponse.schema.json

inst/schema/ModelSubmitData.schema.json

inst/schema/ModelSubmitRequest.schema.json

inst/schema/ModelSubmitResponse.schema.json

inst/schema/NestedColumnValue.schema.json

inst/schema/NestedFilterOption.schema.json

inst/schema/Notes.schema.json

inst/schema/PjnzResponseData.schema.json

inst/schema/PlottingMetadataResponse.schema.json

inst/schema/PopulationResponseData.schema.json

inst/schema/PrerunRequest.schema.json

inst/schema/ProgrammeDataRow.schema.json

inst/schema/ProgrammeFilters.schema.json

inst/schema/ProgrammeResponseData.schema.json

inst/schema/ProgressPhase.schema.json

inst/schema/ProjectRehydrateResultResponse.schema.json

inst/schema/ProjectRehydrateStatusResponse.schema.json

inst/schema/ProjectRehydrateSubmitRequest.schema.json

inst/schema/ProjectRehydrateSubmitResponse.schema.json

inst/schema/ProjectState.schema.json

inst/schema/Response.schema.json

inst/schema/SessionFile.schema.json

inst/schema/ShapeResponseData.schema.json

inst/schema/SurveyDataRow.schema.json

inst/schema/SurveyFilters.schema.json

inst/schema/SurveyResponseData.schema.json

inst/schema/TableMetadata.schema.json

inst/schema/URI.schema.json

inst/schema/ValidateBaselineRequest.schema.json

inst/schema/ValidateBaselineResponse.schema.json

inst/schema/ValidateInputRequest.schema.json

inst/schema/ValidateInputResponse.schema.json

inst/schema/ValidateSurveyAndProgrammeRequest.schema.json

inst/schema/VersionInfo.schema.json

inst/schema/VmmcResponseData.schema.json

inst/schema/Warning.schema.json

inst/traduire/en-translation.json

inst/traduire/fr-translation.json

inst/traduire/pt-translation.json

man/api.Rd man/assert_anc_client_numbers.Rd man/assert_column_matches.Rd man/assert_column_positive_numeric.Rd man/assert_expected_values.Rd man/assert_no_na.Rd man/assert_single_source.Rd man/assert_unique_combinations.Rd man/build_json.Rd man/collapse.Rd man/construct_tree.Rd man/do_endpoint_model_options.Rd man/do_validate_anc.Rd man/do_validate_baseline.Rd man/do_validate_population.Rd man/do_validate_programme.Rd man/do_validate_shape.Rd man/do_validate_survey.Rd man/do_validate_vmmc.Rd man/download_debug.Rd man/format_notes.Rd man/get_indicator_data.Rd man/get_selected_mappings.Rd man/hintr_submit_prerun.Rd man/read_long_indicator_filters.Rd man/read_wide_indicator_filters.Rd man/validate_json_schema.Rd

scripts/build_readme

scripts/build_test_data

scripts/calibrate_payload.json

scripts/collect_translations.R

scripts/download_payload.json

scripts/model_payload.json

scripts/redis

scripts/run_migration_1.1.25

scripts/run_migration_2.9.11

scripts/run_model

scripts/test_integration

tests/testthat.R tests/testthat/helper-endpoint.R tests/testthat/helper-model.R tests/testthat/helper-payload.R tests/testthat/helper-queue.R tests/testthat/helper-sensitive-data.R tests/testthat/helper-traduire.R tests/testthat/integration-server.R tests/testthat/test-01-endpoints-download.R tests/testthat/test-02-api.R tests/testthat/test-03-run-model.R tests/testthat/test-04-adr-metadata.R tests/testthat/test-05-calibrate.R tests/testthat/test-06-debug.R tests/testthat/test-07-endpoints-model.R tests/testthat/test-08-endpoints-chart-data.R tests/testthat/test-cache.R tests/testthat/test-comparison.R tests/testthat/test-download.R tests/testthat/test-endpoints-hintr.R tests/testthat/test-endpoints-model-options.R tests/testthat/test-endpoints-prerun.R tests/testthat/test-endpoints-rehydrate.R tests/testthat/test-endpoints-upload.R tests/testthat/test-endpoints-validate-baseline-all.R tests/testthat/test-endpoints-validate-input.R tests/testthat/test-endpoints-validate-survey-and-programme.R tests/testthat/test-endpoints.R tests/testthat/test-errors.R tests/testthat/test-filters.R tests/testthat/test-indicators.R tests/testthat/test-json.R tests/testthat/test-logging.R tests/testthat/test-main.R tests/testthat/test-metadata.R tests/testthat/test-migrations.R tests/testthat/test-model-options.R tests/testthat/test-payload-helpers.R tests/testthat/test-prerun.R tests/testthat/test-queue.R tests/testthat/test-read-data.R tests/testthat/test-time-series.R tests/testthat/test-utils.R tests/testthat/test-validate-inputs.R tests/testthat/test-validation-asserts.R tests/testthat/test-zzz.R

tests/testthat/testdata/Botswana2018.PJNZ

tests/testthat/testdata/Malawi2019.PJNZ

tests/testthat/testdata/README.md

tests/testthat/testdata/anc.csv

tests/testthat/testdata/invalid_files.zip

tests/testthat/testdata/malawi.geojson

tests/testthat/testdata/malawi_missing_display.geojson

tests/testthat/testdata/malawi_missing_regions.geojson

tests/testthat/testdata/malawi_tst.geojson

tests/testthat/testdata/malformed_anc.csv

tests/testthat/testdata/malformed_programme.csv

tests/testthat/testdata/malformed_survey.csv

tests/testthat/testdata/mixed_pjnz_countries.zip

tests/testthat/testdata/population.csv

tests/testthat/testdata/programme.csv

tests/testthat/testdata/programme_no_vls.csv

tests/testthat/testdata/survey.csv

tests/testthat/testdata/survey_prevalence_only.csv

tests/testthat/testdata/uganda.geojson

tests/testthat/testdata/vmmc.xlsx

mrc-ide/hintr documentation built on May 1, 2024, 5:33 a.m.