Files in mrc-ide/india-ascertainment
Analysis of COVID-19 mortality in India

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DESCRIPTION

LICENCE

NAMESPACE

R/mcmc_utils.R R/nimue_utils.R R/plot_utils.R R/sero_utils.R R/utils-pipe.R R/utils.R README.Rmd README.md analysis/cluster_submitting.R

analysis/data/derived/central_counterfactual_projections_2021-11-21.rds

analysis/data/derived/central_projections_2021-11-21.rds

analysis/data/derived/death_reporting.rds

analysis/data/derived/demog.rds

analysis/data/derived/indian_demography_2021.csv

analysis/data/derived/sero.rds

analysis/data/raw/hosp_beds.csv

analysis/data/raw/icu_beds.csv

analysis/data/raw/india_serology.csv

analysis/data/raw/indian_demography.csv

analysis/data/raw/indian_demography_2021.csv

analysis/data/raw/indian_pops.csv

analysis/data/raw/round4.csv

analysis/data/raw/state_mort_month.csv

analysis/downstream.R analysis/pars_best.R analysis/plots/appendix2.pdf analysis/plots/deaths_averted.pdf

analysis/plots/deaths_averted.png

analysis/plots/deaths_national.pdf

analysis/plots/deaths_national.png

analysis/plots/registration_relationship.pdf

analysis/plots/registration_relationship.png

analysis/plots/reporting_fractions_inferred.pdf

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analysis/plots/sero_national.pdf

analysis/plots/sero_national.png

analysis/plots/state_aversions.pdf

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analysis/plots/state_aversions_1.pdf

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analysis/plots/state_aversions_2.pdf

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analysis/plots/state_aversions_3.pdf

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analysis/plots/state_aversions_4.pdf

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analysis/plots/state_excess.pdf

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analysis/safir_run.R analysis/sourcing_data.R

analysis/tables/.~lock.deaths_averted.csv#

analysis/tables/deaths_averted.csv

archive/.orderly_archive_version

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archive/india_sub_national/20211219-152321-4d4e5446/R/plotting.R archive/india_sub_national/20211219-152321-4d4e5446/R/spline_fit.R archive/india_sub_national/20211219-152321-4d4e5446/R/vaccine.R

archive/india_sub_national/20211219-152321-4d4e5446/coverage_strategies.rds

archive/india_sub_national/20211219-152321-4d4e5446/demog.rds

archive/india_sub_national/20211219-152321-4d4e5446/fitting.pdf

archive/india_sub_national/20211219-152321-4d4e5446/hosp_beds.rds

archive/india_sub_national/20211219-152321-4d4e5446/icu_beds.rds

archive/india_sub_national/20211219-152321-4d4e5446/min_rfs.rds

archive/india_sub_national/20211219-152321-4d4e5446/orderly.yml

archive/india_sub_national/20211219-152321-4d4e5446/orderly_run.rds

archive/india_sub_national/20211219-152321-4d4e5446/pars_init.rds

archive/india_sub_national/20211219-152321-4d4e5446/pop.rds

archive/india_sub_national/20211219-152321-4d4e5446/proj.rds

archive/india_sub_national/20211219-152321-4d4e5446/res.rds

archive/india_sub_national/20211219-152321-4d4e5446/script.R

archive/india_sub_national/20211219-152321-4d4e5446/sero.rds

backup/db/orderly.sqlite.20211202-224943

india-ascertainment.Rproj

man/final_death_comp_df.Rd man/final_death_comp_province.Rd man/final_deaths.Rd man/format_sero_df.Rd man/generate_draws.Rd man/generate_parameters.Rd man/nim_sq_format.Rd man/nimue_format.Rd man/pipe.Rd man/plot_sero_df.Rd man/sero_det.Rd man/seroprev_df_det.Rd

orderly

orderly.sqlite

orderly_config.yml

src/india_sub_national/R/plotting.R src/india_sub_national/R/spline_fit.R src/india_sub_national/R/vaccine.R

src/india_sub_national/coverage_strategies.rds

src/india_sub_national/demog.rds

src/india_sub_national/hosp_beds.rds

src/india_sub_national/icu_beds.rds

src/india_sub_national/min_rfs.rds

src/india_sub_national/orderly.yml

src/india_sub_national/pars_init.rds

src/india_sub_national/pop.rds

src/india_sub_national/script.R

src/india_sub_national/sero.rds

mrc-ide/india-ascertainment documentation built on Jan. 20, 2022, 11:51 p.m.

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mrc-ide/india-ascertainment
Analysis of COVID-19 mortality in India

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Analysis of COVID-19 mortality in India

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mrc-ide/india-ascertainment Analysis of COVID-19 mortality in India

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mrc-ide/india-ascertainment
Analysis of COVID-19 mortality in India

Files in mrc-ide/india-ascertainment
Analysis of COVID-19 mortality in India