nimue_format: Nimue format that returns just compartments/summaries...

In mrc-ide/india-ascertainment: Analysis of COVID-19 mortality in India

Description

Nimue format that returns just compartments/summaries requested

Usage

nimue_format(
  out,
  var_select = NULL,
  reduce_age = TRUE,
  combine_compartments = TRUE,
  date_0 = NULL
)

Arguments

out	nimue_simulation object
var_select	Vector of compartment names, e.g. c("S", "R"). In addition a number of summary compartment can be requested. These include: "deaths" Daily Deaths "infections" Daily Infections "hospital_occupancy" Occupied Hospital Beds "ICU_occupancy" Occupied ICU Beds "hospital_demand" Required Hospital Beds "ICU_demand" Required ICU Beds "hospital_incidence" Incidence of hospitilisation "ICU_incidence" Incidence of ICU admissions "hospitilisations" Incidence of hospital+ICU admissions ""vaccines", "unvaccinated", "vaccinated", "priorvaccinated" Vaccine outputs
reduce_age	Collapse age-dimension, calculating the total in the compartment.
combine_compartments	Collapse compartments of same type together (e.g. E1 and E2 -> E)
date_0	Date of time 0, if specified a date column will be added

Value

Formatted long data.frame

mrc-ide/india-ascertainment documentation built on Jan. 20, 2022, 11:51 p.m.