human_equilibrium: Equilibrium solution

In mrc-ide/malariaEquilibrium: Return equilibrium solution to malaria transmission model

Description

Returns the equilibrium states for the model of Griffin et al. (2014). A derivation of the equilibrium solutions can be found in Griffin (2016). Integrates over the distribution of biting heterogeneity using Gaussian quadrature.

Usage

human_equilibrium(EIR, ft, p, age, h = gq_normal(10))

Arguments

EIR	EIR for adults, in units of infectious bites per person per year
ft	proportion of clinical cases effectively treated
p	vector of model parameters
age	vector of age groups, in units of years
h	a list of Gauss-Hermite nodes and associated weights, used for integrating over heterogeneity in biting. See ?gq_normal for an example.

References

Griffin et. al. (2014). Estimates of the changing age-burden of Plasmodium falciparum malaria disease in sub-Saharan Africa. doi:10.1038/ncomms4136

Griffin (2016). Is a reproduction number of one a threshold for Plasmodium falciparum malaria elimination? doi:10.1186/s12936-016-1437-9 (see supplementary material)

mrc-ide/malariaEquilibrium documentation built on Jan. 13, 2022, 12:25 a.m.