extract_shiny90_age_sex: Export proportion aware by five year age group from Shiny90

In mrc-ide/naomi: Naomi Model for Subnational HIV Estimates

Export proportion aware by five year age group from Shiny90

Description

Export estimates for proportion aware of status from a Shiny90 output file to five-year age groups 15-19 to 50+.

Usage

extract_shiny90_age_sex(shiny90_path, pjnz_path = NULL, years = NULL)

Arguments

shiny90_path	file path to .shiny90 digest file.
pjnz_path	file path to PJNZ file
years	year(s) to generate estimates; an integer or a vector of integers. If NULL, all years available in estimates are returned (default).

Details

The 'artnum' divided by 'plhiv' columns in the output will give a different ART coverage than Spectrum output for the same year because these outputs are based on the internal mid-year ART coverage in Spectrum, while Spectrum reports an end of year (Dec 31) ART coverage.

Value

A data frame consisting of the number of PLHIV, aware of status and on ART by sex and five year age group 15-49 and age 50+ for specified years.

Examples

pjnz <- system.file("extdata/demo_mwi2019.PJNZ", package = "naomi")
shiny90dir <- tempfile()
utils::unzip(pjnz, "malawi.zip.shiny90", exdir = shiny90dir)
shiny90_path <- file.path(shiny90dir, "malawi.zip.shiny90")

extract_shiny90_age_sex(shiny90_path, pjnz, year = 2010:2019)

mrc-ide/naomi documentation built on April 10, 2024, 2:13 p.m.