Man pages for mrc-ide/nimue
COVID-19 Vaccine Modelling
| add_age | Keep age groups |
| add_weighted_efficacy | Extract weighted efficacies |
| administer_first_dose | Administer first doses |
| administer_second_dose | Administer second doses |
| assign_doses | Assign N doses to age groups based on weightings by number of... |
| beta_est_infectiousness | Estimate beta parameter for explicit model |
| collapse_age | Collapse age groups |
| coverage | Estimate coverage by age group |
| default_durations | Return the default hospital durations for modelling defined... |
| default_probs | Return the default probabilities for modelling defined in... |
| default_vaccine_pars | Return the default vaccine parameters for modelling |
| eligable_for_second | Identify those eligible for a second dose |
| extract_dose_number | Extract dose numbers administers |
| format | Format vaccine model output |
| format_internal | Internals of Format vaccine model output as data.frame |
| init | Check and set up initial values for vaccine model |
| nimue_deterministic_model | nimue model creation. |
| p_all | Prioritise all |
| parameters | Vaccine parameters |
| p_elderly | Prioritise Elderly |
| plot.nimue_simulation | nimue simulation plot |
| p_risk_elderly_working_children | Prioritise Working age risk group > Elderly > working age >... |
| p_risk_elderly_working_children_step | Prioritise Working age risk group > Elderly > working age >... |
| p_working_elderly_children | Prioritise Working > Elderly > Children |
| run | Run the vaccine model |
| strategy_matrix | Prioritisation matrix |
| target_pop | Target number of individual in each age group to vaccinate |
| weighted_efficacy | Estimate weighted efficacies |
