format_internal: Internals of Format vaccine model output as data.frame

In mrc-ide/nimue: COVID-19 Vaccine Modelling

Internals of Format vaccine model output as data.frame

Description

Internals of Format vaccine model output as data.frame

Usage

format_internal(x, compartments, summaries, reduce_age, index, time, replicate)

Arguments

x	squire_simulation object
compartments	Vector of compartment names, e.g. c("S", "R"), or sub-compartment names, e.g. c("S", "E1", "E2")
summaries	Vector of summary names, which may be: "deaths" Deaths per day "infections" Infections per day. New infections (note this is currently a slightly different definitionto the main Squire mode) "hospitilisations" Hospitalisations per day (Note this takes into account hospital capacity) "hospital_occupancy" Occupied Hospital Beds "ICU_occupancy" Occupied ICU Beds "hospital_demand Required Hospital Beds "ICU_demand Required ICU Beds "vaccinated" Vaccines administered per day
reduce_age	Collapse age-dimension, calculating the total in the compartment.
index	odin ouput index
time	time vector
replicate	outpu replicate number

mrc-ide/nimue documentation built on March 25, 2022, 4:45 a.m.