API for mrc-ide/reactidd
Package for the temporal analysis of the REACT study
| Global functions | |
|---|---|
| CalibrateRegression | Source code |
| ComputeFDP | Source code |
| ComputePFER | Source code |
| ExtendList | Source code |
| ExtractPrevalence | Source code |
| ExtrapolateByProportionToTest | Source code |
| FormatCI | Source code |
| FormatCount | Source code |
| FormatOR | Source code |
| FormatPrevalence | Source code |
| FormatPvalue | Source code |
| GetArgmax | Source code |
| GetArgmaxId | Source code |
| GetBinomialProbabilities | Source code |
| GetBinomialScore | Source code |
| GetLambdaPath | Source code |
| GetSubsample | Source code |
| LambdaGridRegression | Source code |
| StabilityCalibRegression | Source code |
| add_conf_ints | Source code |
| add_public_data_to_plot | Source code |
| calculateStats | Source code |
| clean_death_data | Source code |
| clean_hosp_data | Source code |
| createMasterTable | Source code |
| createMyTableOne | Source code |
| estimate_p_spline_average_R | Source code |
| exponential_estimate_R | Man page Source code |
| get_response_posterior | Source code |
| jaccardCalc | Source code |
| load_example_data | Man page Source code |
| load_example_data_weighted | Source code |
| load_example_phe_data | Man page Source code |
| load_packages | Source code |
| makeStratifiedTables | Source code |
| make_tables | Source code |
| nd_func | Source code |
| nn_func | Source code |
| nn_func2 | Source code |
| overall_prev | Source code |
| pairwise_distances | Source code |
| plotMyROC | Source code |
| plotUnivResults | Source code |
| plot_breakpoint_R | Source code |
| plot_breakpoint_complex_R | Source code |
| plot_exp_model | Man page Source code |
| plot_exp_model_phe | Man page Source code |
| plot_p_spline_R | Source code |
| plot_p_spline_R_two_variants | Source code |
| plot_p_spline_igr | Source code |
| plot_p_spline_igr_two_variants | Source code |
| plot_p_spline_inc | Source code |
| plot_p_spline_minimum_density | Man page Source code |
| plot_p_spline_phe | Man page Source code |
| plot_p_spline_prev | Man page Source code |
| plot_p_spline_prev_two_variants | Source code |
| plot_spline_difference | Source code |
| reactidd | Man page |
| reactidd-package | Man page |
| run_time_lag_model | Source code |
| shedding_exp_model_plot_density | Source code |
| shedding_get_params | Source code |
| shedding_plot_exp_models | Source code |
| shedding_prepare_data_for_binary_model | Source code |
| shedding_simulate_data | Source code |
| specifyDecimal | Source code |
| stan_both_shedding_exp_models | Source code |
| stan_breakpoint_model_complex_weighted | Source code |
| stan_breakpoint_model_weighted | Source code |
| stan_exp_model | Man page Source code |
| stan_exp_model_phe | Man page Source code |
| stan_exp_model_weighted | Source code |
| stan_p_spline | Man page Source code |
| stan_p_spline_phe | Man page Source code |
| stan_p_spline_weighted | Source code |
| stan_p_spline_weighted_incidence | Source code |
| stan_p_spline_weighted_two_variants | Source code |
| time_lag_model_getmode | Source code |
| time_lag_model_likelihood | Source code |
| time_lag_model_my_prior | Source code |
| time_lag_model_param_new | Source code |
| time_lag_model_runMCMC | Source code |
| univariateModels | Source code |
| univariateModelsInteract | Source code |
| univariatePairwiseModels | Source code |
| univariatePairwisePrevs | Source code |
| univariatePairwiseSimilarity | Source code |
