stan_p_spline: Bayesian p-spline model using stan

In mrc-ide/reactidd: Package for the temporal analysis of the REACT study

Bayesian p-spline model using stan

Description

Bayesian p-spline model using stan

Usage

stan_p_spline(
  X,
  Y,
  N,
  target_dist_between_knots = 5,
  spline_degree = 3,
  iter = 20000,
  warmup = 1000,
  cores = 1,
  chains = 4
)

Arguments

X	date vector.
Y	Numeric vector of number of positive samples
N	Numeric vector of total number of samples
spline_degree	sets the degree of the splines (default = 3)
target_distance_between_knots	sets the number of days between adjacent knots (default = 5)
...	Arguments passed to rstan::sampling (iter, warmup).

Value

An object of class stanfit returned by rstan::sampling

Convert date to numeric Load and run stan model

mrc-ide/reactidd documentation built on May 12, 2024, 11:47 a.m.