compartments_age_render_process_daily: Render categories by age every day

In mrc-ide/safir: Individual-Based Model of COVID Transmission

Render categories by age every day

Description

This only renders output on timesteps that correspond to a day. See examples for how to quickly summarize the output.

Usage

compartments_age_render_process_daily(
  renderer,
  age,
  compartments,
  parameters,
  dt
)

Arguments

renderer	a individual::Render object
age	a individual::IntegerVariable object
compartments	a individual::CategoricalVariable object
parameters	model parameters
dt	size of time step

Examples

## Not run: 
# if the renderer object is called comp_render
tmp <- as.data.table(comp_render$to_dataframe())
tmp <- melt(tmp,id.vars="timestep")
tmp1 <- tmp[, tstrsplit(variable, "_", keep = c(2, 4))]
tmp[ , variable := NULL]
tmp <- cbind(tmp, tmp1)
setnames(x = tmp,old = c("V1", "V2"),new = c("compartment","age"))
compartment_dt <- tmp[, .(value = sum(value)), by = .(compartment, timestep)]

## End(Not run)

mrc-ide/safir documentation built on Aug. 2, 2022, 10:47 a.m.