dose_age_render_process_daily: Render doses by age every day

In mrc-ide/safir: Individual-Based Model of COVID Transmission

Render doses by age every day

Description

Renders the number of individuals with each dose in each age bin (cross tabulated doses and ages). This only renders output on timesteps that correspond to a day. See examples for how to quickly summarize the output.

Usage

dose_age_render_process_daily(renderer, age, dose, parameters, dt)

Arguments

renderer	a Render object
age	a IntegerVariable object
dose	a IntegerVariable object
parameters	model parameters
dt	size of time step

Examples

## Not run: 
# if the renderer object is called dose_age_renderer
tmp <- as.data.table(dose_age_renderer$to_dataframe())
tmp <- melt(tmp,id.vars="timestep")
tmp1 <- tmp[, tstrsplit(variable, "_", keep = c(2, 4))]
tmp[ , variable := NULL]
tmp <- cbind(tmp, tmp1)
setnames(x = tmp,old = c("V1", "V2"),new = c("dose","age"))
dose_dt <- tmp[, .(value = sum(value)), by = .(dose, timestep)]

## End(Not run)

mrc-ide/safir documentation built on Aug. 2, 2022, 10:47 a.m.