plot.rt_optimised: Essentially just does squire::plot_pmcmc_sample. Not intended...

In mrc-ide/squire.page: Functions used in global-lmic-reports-orderly and other repos

Essentially just does squire::plot_pmcmc_sample. Not intended for use otherwise.

Description

Essentially just does squire::plot_pmcmc_sample. Not intended for use otherwise.

Usage

## S3 method for class 'rt_optimised'
plot(
  x,
  q = c(0.025, 0.975),
  replicates = TRUE,
  summarise = FALSE,
  ci = TRUE,
  particle_fit = FALSE,
  ...
)

Arguments

x	rt_optimised output object
q	Quantiles for upper and lower of interval ribbon
replicates	Plot replicates
summarise	Logical, add summary line
ci	logical add confidence interval ribbon
particle_fit	For compatibility, if TRUE deaths are cumulative, else deaths are daily
...	placeholder for compatibility does nothing.

mrc-ide/squire.page documentation built on May 27, 2023, 11:20 a.m.