parameters_simple_SEEIR: Parmeters for the simple SEEIR model
In mrc-ide/squire: SEIR transmission model of COVID-19

parameters_simple_SEEIR

R Documentation

Parmeters for the simple SEEIR model

Description

Parmeters for the simple SEEIR model

Usage

parameters_simple_SEEIR(
  R0 = 3,
  tt_R0 = 0,
  dt = 0.1,
  init = NULL,
  dur_E = 4.58,
  dur_I = 2.09,
  day_return = FALSE,
  population,
  contact_matrix_set,
  tt_contact_matrix = 0,
  time_period = 365
)

Arguments

`R0`	Basic reproduction number
`tt_R0`	Change time points for R0
`dt`	Time step
`init`	Data.frame of initial conditions
`dur_E`	Mean duration of incubation period (days)
`dur_I`	Mean duration of infectious period (days) in simple model
`day_return`	Logical, do we want to return outut after each day rather than each dt. Default = FALSE
`population`	Population vector (for each age group)
`contact_matrix_set`	Contact matrices used in simulation
`tt_contact_matrix`	Time change points for matrix change
`time_period`	Length of simulation