Files in mrc-ide/threemc
(Matt's) Multi-Level Model of Male Circumcision in Sub-Saharan Africa
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md
R/aggregation.R
R/compute_quantiles.R
R/data.R
R/model_prep.R
R/modelling.R
R/ppc.R
R/ppc_2.R
R/prepare_survey_data.R
R/roxygentags.R
R/shell_dataset.R
R/util.R
R/zzz.R
README.md
data/datapack_psnu_area_level.RData
data/demo_areas.RData
data/demo_populations.RData
data/demo_survey_circumcision.RData
data/esa_wca_regions.RData
inst/include/Makevars
inst/include/init.c
inst/include/utils.c
man/add_area_id.Rd
man/aggregate_sample.Rd
man/aggregate_sample_age_group.Rd
man/append_mc_name.Rd
man/brackify.Rd
man/change_agegroup_convention.Rd
man/circ_sample_tmb.Rd
man/combine_areas.Rd
man/compute_quantiles.Rd
man/create_aggregate_structure.Rd
man/create_design_matrices.Rd
man/create_dirs_r.Rd
man/create_hazard_matrix_agetime.Rd
man/create_icar_prec_matrix.Rd
man/create_integration_matrices.Rd
man/create_integration_matrix_agetime.Rd
man/create_integration_matrix_agetime_lag.Rd
man/create_rw_prec_matrix.Rd
man/create_shell_dataset.Rd
man/create_survival_matrices.Rd
man/datapack_psnu_area_level.Rd
man/demo_areas.Rd
man/demo_populations.Rd
man/demo_survey_circumcision.Rd
man/esa_wca_regions.Rd
man/fill_downup_populations.Rd
man/match_age_group_to_ages.Rd
man/merge_area_info.Rd
man/minimise_fit_obj.Rd
man/n_circumcised.Rd
man/normalise_weights_kish.Rd
man/patterns.Rd
man/posterior_summary_fun.Rd
man/prepare_sample_data.Rd
man/prepare_survey_data.Rd
man/prevalence_change.Rd
man/read_circ_data.Rd
man/reassign_surey_level.Rd
man/rmvnorm_sparseprec.Rd
man/sample_tmb.Rd
man/scale_gmrf_precision.Rd
man/sdreport_joint_precision.Rd
man/shell_data_spec_area.Rd
man/split_mmc_design_matrices_paed.Rd
man/spread_areas.Rd
man/survey_points_dmppt2_convert_convention.Rd
man/threemc_aggregate.Rd
man/threemc_empirical_rates.Rd
man/threemc_fit_model.Rd
man/threemc_initial_pars.Rd
man/threemc_ppc.Rd
man/threemc_ppc2.Rd
man/threemc_prepare_model_data.Rd
scripts/goodpractice.R
src/Makefile
src/Makefile.win
src/Makevars
src/Surv_SpaceAgeTime.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType2.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_Const_Paed_MMC.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_Const_Paed_MMC2.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_Const_Paed_MMC_RW.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_Const_Paed_MMC_RW2.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_Const_Paed_MMC_RW_MMC2.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_RW.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_RW2.cpp
src/Surv_SpaceAgeTime_ByType_withUnknownType_RW_MMC2.cpp
src/Surv_SpaceAgeTime_RW.cpp
tests/testthat.R
tests/testthat/data_raw/LSO_areas.shp
tests/testthat/data_raw/LSO_survey_circumcision.csv.gz
tests/testthat/data_raw/LSO_survey_clusters.csv.gz
tests/testthat/data_raw/LSO_survey_individuals.csv.gz
tests/testthat/refdata/LSO_Results_DistrictAgeTime_ByType.csv.gz
tests/testthat/test-util.R
vignettes/.gitignore
vignettes/01_intro.Rmd
vignettes/library.bib
vignettes/plos-one.csl
