reassign_surey_level: Define circumcision type

In mrc-ide/threemc: (Matt's) Multi-Level Model of Male Circumcision in Sub-Saharan Africa

Define circumcision type

Description

Using circ_who and circ_where, determines survey type.

Using circ_who and circ_where, determines survey type.

Join surveys with areas for each level leading up to the desired area level. This distributes granular surveys to desired area_level using parent_ids.

Usage

compare_predictions(actual, predictions)

find_circ_type(survey_circumcision)

reassign_survey_level(
  survey_circumcision,
  areas,
  area_lev,
  remove_add_cols = TRUE
)

Arguments

actual	vector of observed values.
predictions	dataframe/tibble/data.table or matrix with a row for each value in actual, and a column for each prediction.
survey_circumcision	Information on male circumcision status from surveys. If this is a list or contains more than one country, the function is performed for each country present, returning a list.
areas	sf shapefiles for specific country/region.
area_lev	Desired admin boundary level to perform the analysis on.
remove_add_cols	Only keep columns originally present in survey_circumcision, Default = TRUE.

Value

List of:

• "summary_stats_df"pointwise prediction stats as a data.frame

• "summary_stats"mean/summed overall prediction stats

Surveys with circumcision type labelled by the column type.

Surveys with records reassigned to area_lev.

mrc-ide/threemc documentation built on Feb. 9, 2024, 5:16 p.m.