create_integration_matrices: Create Integration Matrices for Selecting Instantaneous...

In mrc-ide/threemc: (Matt's) Multi-Level Model of Male Circumcision in Sub-Saharan Africa

Create Integration Matrices for Selecting Instantaneous Hazard

Description

Create (unlagged and lagged) integration matrices for selecting instantaneous hazard rate, required for fitting TMB model.

Usage

create_integration_matrices(
  out,
  area_lev = NULL,
  time1 = "time1",
  time2 = "time2",
  age = "age",
  strat = "space",
  ...
)

Arguments

out	Shell dataset (outputted by create_shell_dataset with a row for every unique record in circumcision survey data for a given area. Also includes empirical estimates for circumcision estimates for each unique record.
area_lev	PSNU area level for specific country.
time1	Variable name for time of birth, Default: "time1"
time2	Variable name for time circumcised or censored, Default: "time2"
age	Variable with age circumcised or censored. Default: "age"
strat	Variable to stratify by in using a 3D hazard function, Default: NULL
...	Further arguments passed to or from other methods.

Value

list of length 2 of integration matrices for selecting instantaneous hazard rate.

See Also

create_shell_dataset create_integration_matrix_agetime create_integration_matrix_agetime_lag

mrc-ide/threemc documentation built on Feb. 9, 2024, 5:16 p.m.