ectorun: ectorun

In mrke/NicheMapR: R implementation of Niche Mapper software for biophysical modelling

ectorun

Description

R wrapper for Fortran binary of Niche Mapper microclimate model

Usage

ectorun(ecto)

Arguments

ecto	A vector of input variables for the microclimate model
metout	The above ground micrometeorological conditions under the minimum specified shade
shadmet	The above ground micrometeorological conditions under the maximum specified shade
soil	Hourly predictions of the soil temperatures under the minimum specified shade
shadsoil	Hourly predictions of the soil temperatures under the maximum specified shade
soilmoist	Hourly predictions of the soil moisture under the minimum specified shade
shadmoist	Hourly predictions of the soil moisture under the maximum specified shade
soilpot	Hourly predictions of the soil water potential under the minimum specified shade
shadpot	Hourly predictions of the soil water potential under the maximum specified shade
humid	Hourly predictions of the soil humidity under the minimum specified shade
shadhumid	Hourly predictions of the soil humidity under the maximum specified shade
tcond	Hourly predictions of the soil thermal conductivity under the minimum specified shade
shadtcond	Hourly predictions of the soil humidity under the maximum specified shade
DEP	Depths used for the microclimate model
rainfall	Daily rainfall
rainhr	Hourly rainfall (overwrites rainfall if non-negative
debmod	Dynamic Energy Budget (DEB) model parameters
deblast	Initial DEB state
foodwaters	Food water content (add units)
foodlevels	Food levels (add units)
SKINW	Hourly skin wetness, %
g_vs_ab	leaf vapour conductance, abaxial (bottom of leaf), mol m-2 s-1
g_vs_ad	leaf vapour conductance, adaxial (top of leaf), mol m-2 s-1
PDIF	Hourly diffuse fraction of solar radiation, -
wetlandTemps	Temperature of water body, deg C
wetlandDepths	Depth of water body
GLMtemps	General Lake Model water temperatures
GLMO2s	General Lake Model water O2 partial pressures
GLMsalts	General Lake Model water salinities
GLMpHs	General Lake Model water pHs
GLMfoods	General Lake Model water food densities
arrhenius	Arrhenius thermal response
arrhenius2	Arrhenius thermal response for temperature size rule
thermal_stages	Stage-specific thermal physiology
behav_stages	Stage-specific behaviour
water_stages	Stage-specific water related parameters
nutri_stages	Stage-specific nutrition related parameters
minshades	Minimum shade levels
maxshades	Maximum shade levels
S_instar	For the Insect DEB model

mrke/NicheMapR documentation built on Jan. 13, 2025, 9:11 p.m.