Files in mrke/NicheMapR
R implementation of Niche Mapper software for biophysical modelling
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
License.txt
NAMESPACE
NicheMapR.Rproj
R/COND_ecto.R
R/CONV.R
R/CONV_ecto.R
R/CampNormTbl9_1.R
R/Cosby1984Tbl4.R
R/Cosby1984Tbl5.R
R/DEB.R
R/DEB_const.R
R/DEB_euler.R
R/DEB_var.R
R/DRYAIR.R
R/FUN_ecto.R
R/GEOM.R
R/GEOM_ecto.R
R/IRPROP.R
R/MET_ecto.R
R/NESTCALC.R
R/RADIN_ecto.R
R/RADOUT_ecto.R
R/RESP_ecto.R
R/SCAN_FordDryLake_2015.R
R/SCANsites.R
R/SEVAP.R
R/SEVAP_ecto.R
R/SIMULSOL.R
R/SOLAR.R
R/SOLAR_ecto.R
R/SOLVENDO.R
R/VAPPRS.R
R/WATERPROP.R
R/WETAIR.R
R/WETAIR.dp.R
R/WETAIR.rh.R
R/WETAIR.wb.R
R/Weathers1976Fig1.R
R/Weathers1976Fig2.R
R/Weathers1976Fig3.R
R/Weathers1976Fig5.R
R/ZBRENT.R
R/build.global.climate.R
R/crudat2raster.R
R/ectoR_devel.R
R/ectorun.R
R/ectotherm.R
R/egg_water.R
R/ellipsoid_endo.R
R/endoR.R
R/endoR_devel.R
R/gads.R
R/get.global.climate.R
R/get.longlat.R
R/get_p_wet.R
R/get_pressure.R
R/get_terra.R
R/leaf_temperature.R
R/micro_aust.R
R/micro_era5.R
R/micro_global.R
R/micro_ncep.R
R/micro_nz.R
R/micro_terra.R
R/micro_uk.R
R/micro_usa.R
R/microrun.R
R/onelump.R
R/onelump_var.R
R/pedotransfer.R
R/plantgro.R
R/rundeb.R
R/rungads.R
R/trans_behav.R
R/twolump.R
README.md
data/CampNormTbl9_1.RData
data/Cosby1984Tbl4.RData
data/Cosby1984Tbl5.RData
data/PropAirTable10.RData
data/PropAirTable11.RData
data/PropAirTable12.RData
data/SCAN_FordDryLake_2015.RData
data/SCANsites.RData
data/Weathers1976Fig1.RData
data/Weathers1976Fig2.RData
data/Weathers1976Fig3.RData
data/Weathers1976Fig5.RData
inst/doc/deb-model-tutorial.R
inst/doc/deb-model-tutorial.Rmd
inst/doc/deb-model-tutorial.html
inst/doc/ectotherm-model-tutorial.R
inst/doc/ectotherm-model-tutorial.Rmd
inst/doc/ectotherm-model-tutorial.html
inst/doc/endotherm-components-tutorial.R
inst/doc/endotherm-components-tutorial.Rmd
inst/doc/endotherm-components-tutorial.html
inst/doc/endotherm-model-equations.R
inst/doc/endotherm-model-equations.Rmd
inst/doc/endotherm-model-equations.html
inst/doc/endotherm-model-tutorial.R
inst/doc/endotherm-model-tutorial.Rmd
inst/doc/endotherm-model-tutorial.html
inst/doc/index.html
inst/doc/microclimate-IO.R
inst/doc/microclimate-IO.Rmd
inst/doc/microclimate-IO.html
inst/doc/microclimate-hourly-input-example.R
inst/doc/microclimate-hourly-input-example.Rmd
inst/doc/microclimate-hourly-input-example.html
inst/doc/microclimate-model-theory-equations.R
inst/doc/microclimate-model-theory-equations.Rmd
inst/doc/microclimate-model-theory-equations.html
inst/doc/microclimate-model-tutorial.R
inst/doc/microclimate-model-tutorial.Rmd
inst/doc/microclimate-model-tutorial.html
inst/doc/microclimate-monthly-input-example.R
inst/doc/microclimate-monthly-input-example.Rmd
inst/doc/microclimate-monthly-input-example.html
inst/doc/microclimate_inputs.R
inst/doc/microclimate_inputs.Rmd
inst/doc/microclimate_inputs.html
inst/doc/properties-of-air.R
inst/doc/properties-of-air.Rmd
inst/doc/properties-of-air.html
inst/doc/transient-equation-derivations.R
inst/doc/transient-equation-derivations.Rmd
inst/doc/transient-equation-derivations.html
inst/extdata/extback.dat
inst/extdata/glodat/summer.dat
inst/extdata/glodat/winter.dat
inst/extdata/optdat/ins00
inst/extdata/optdat/inso00
inst/extdata/optdat/inso00ab
inst/extdata/optdat/inso00co
inst/extdata/optdat/miam00
inst/extdata/optdat/micm00
inst/extdata/optdat/minm00
inst/extdata/optdat/mitr00
inst/extdata/optdat/soot00
inst/extdata/optdat/ssam00
inst/extdata/optdat/ssam50
inst/extdata/optdat/ssam70
inst/extdata/optdat/ssam80
inst/extdata/optdat/ssam90
inst/extdata/optdat/ssam95
inst/extdata/optdat/ssam98
inst/extdata/optdat/ssam99
inst/extdata/optdat/sscm00
inst/extdata/optdat/sscm50
inst/extdata/optdat/sscm70
inst/extdata/optdat/sscm80
inst/extdata/optdat/sscm90
inst/extdata/optdat/sscm95
inst/extdata/optdat/sscm98
inst/extdata/optdat/sscm99
inst/extdata/optdat/suso00
inst/extdata/optdat/suso50
inst/extdata/optdat/suso70
inst/extdata/optdat/suso80
inst/extdata/optdat/suso90
inst/extdata/optdat/suso95
inst/extdata/optdat/suso98
inst/extdata/optdat/suso99
inst/extdata/optdat/waso00
inst/extdata/optdat/waso50
inst/extdata/optdat/waso70
inst/extdata/optdat/waso80
inst/extdata/optdat/waso90
inst/extdata/optdat/waso95
inst/extdata/optdat/waso98
inst/extdata/optdat/waso99
inst/extdata/profiles.dat
man/COND_ecto.Rd
man/CONV_ENDO.Rd
man/CONV_ecto.Rd
man/CampNormTbl9_1.Rd
man/Cosby1984Tbl4.Rd
man/Cosby1984Tbl5.Rd
man/DEB.Rd
man/DEB_const.Rd
man/DEB_euler.Rd
man/DEB_var.Rd
man/DRYAIR.Rd
man/FUN_ecto.Rd
man/GEOM_ENDO.Rd
man/GEOM_ecto.Rd
man/IRPROP.Rd
man/MET_ecto.Rd
man/NESTCALC.Rd
man/RADIN_ecto.Rd
man/RADOUT_ecto.Rd
man/RESP_ecto.Rd
man/SCAN_FordDryLake_2015.Rd
man/SCANsites.Rd
man/SEVAP_ENDO.Rd
man/SEVAP_ecto.Rd
man/SIMULSOL.Rd
man/SOLAR_ENDO.Rd
man/SOLAR_ecto.Rd
man/SOLVENDO.Rd
man/VAPPRS.Rd
man/WATERPROP.Rd
man/WETAIR.Rd
man/WETAIR.dp.Rd
man/WETAIR.rh.Rd
man/WETAIR.wb.Rd
man/Weathers1976Fig1.Rd
man/Weathers1976Fig2.Rd
man/Weathers1976Fig3.Rd
man/Weathers1976Fig5.Rd
man/ZBRENT_ENDO.Rd
man/build.global.climate.Rd
man/crudat2raster.Rd
man/ectoR_devel.Rd
man/ectorun.Rd
man/ectotherm.Rd
man/egg_water.Rd
man/ellipsoid.Rd
man/endoR.Rd
man/endoR_devel.Rd
man/gads.r.Rd
man/get.global.climate.Rd
man/get.longlat.Rd
man/get_p_wet.Rd
man/get_pressure.Rd
man/get_terra.Rd
man/leaf_temperature.Rd
man/micro_aust.Rd
man/micro_era5.Rd
man/micro_global.Rd
man/micro_ncep.Rd
man/micro_nz.Rd
man/micro_terra.Rd
man/micro_uk.Rd
man/micro_usa.Rd
man/microclimate.Rd
man/onelump.Rd
man/onelump_var.Rd
man/pedotransfer.Rd
man/plantgro.Rd
man/rundeb.Rd
man/rungads.Rd
man/trans_behav.Rd
man/twolump.Rd
src/AACOMMONDAT.f
src/ABOVEGROUND.f
src/ADJREC.f
src/BELOWGROUND.f
src/BLKDATA.f
src/BREED.f
src/BTRFLGEOM.f
src/BURROWIN.f
src/COMMONDAT.f
src/COND.f
src/CONV.f
src/CONV_ENDO.f
src/DCHXY.f
src/DEB.f
src/DEB_BABY.f
src/DEB_EULER.f
src/DEB_HOLO.f
src/DEVRESET.f
src/DEXPI.f
src/DGET_AELES.f
src/DGET_AVELHS.f
src/DGET_DEB.f
src/DGET_EEES.f
src/DGET_ELH.f
src/DGET_PSI.f
src/DOPRI5.f
src/DRYAIR.f
src/DSUB.f
src/ECTOTHERM.f
src/ERRMSG.f
src/EVALXZ.f
src/EVAP.f
src/FUN.f
src/FUNC.f
src/FUNSKIN.f
src/FUNWING.f
src/GAMMA.f
src/GEOM.f
src/GEOM_ENDO.f
src/GETKFUR.f
src/INFIL.f
src/IOSOLR.f
src/IRPROP.f
src/ISPLINE.f90
src/MET.f
src/MICRO.f
src/MICROCLIMATE.f
src/MICROSEGMT.f
src/ONELUMP.f
src/OSUB.f
src/PARECT.f
src/PHOTOPERIOD.f
src/POLINT.f
src/QROMB.f
src/RADIN.f
src/RADOUT.f
src/RELHUMID.f
src/RESP.f
src/RESPFUN.f
src/RYTREC.f
src/SEAWATER.f
src/SELDEP.f
src/SEVAP.f
src/SEVAP_ENDO.f
src/SFODE.f
src/SHADEADJUST.f
src/SIMULSOL.f
src/SINEC.f
src/SNOWLAYER.f
src/SOILPROPS.f
src/SOLAR.f
src/SOLAR_ENDO.f
src/SOLOUT.f
src/SOLRAD.f
src/SOLVENDO.f
src/SPLINE.f90
src/TAB.f
src/THERMO.f
src/TIMCON.f
src/TRAPHR.f
src/TRAPZD.f
src/VAPPRS.f
src/VSINE.f
src/WATER.f
src/WETAIR.f
src/WINGS.f
src/WING_SOLAR.f
src/ZBRAC.f
src/ZBRENT.f
src/ZBRENT_ENDO.f
src/aacommondat.mod
src/commondat.mod
src/gads.f
vignettes/ALTFCT.csv
vignettes/Bat_System_Diagram.jpg
vignettes/DEB_mass_budget.png
vignettes/DEB_scheme.png
vignettes/EndoR_scheme.jpg
vignettes/Endo_System_Diagram.jpg
vignettes/Eulamprus_tympanum.png
vignettes/Fig1.png
vignettes/Gas_System_Diagram.jpg
vignettes/Lizard_System_Diagram1.jpg
vignettes/Lizard_System_Diagram2.jpg
vignettes/Lizard_System_Diagram3.jpg
vignettes/OPTICAL.csv
vignettes/OZ.csv
vignettes/deb-model-tutorial.R
vignettes/deb-model-tutorial.Rmd
vignettes/deb-model-tutorial_files/figure-html/fig1-1.png
vignettes/deb-model-tutorial_files/figure-html/fig2-1.png
vignettes/deb-model-tutorial_files/figure-html/fig3-1.png
vignettes/deb-model-tutorial_files/figure-html/fig4-1.png
vignettes/deb-model-tutorial_files/figure-html/fig5-1.png
vignettes/deb-model-tutorial_files/figure-html/fig6-1.png
vignettes/ectotherm-model-tutorial.Rmd
vignettes/endotherm-components-tutorial.Rmd
vignettes/endotherm-model-equations.Rmd
vignettes/endotherm-model-tutorial.Rmd
vignettes/microclimate-IO.Rmd
vignettes/microclimate-hourly-input-example.Rmd
vignettes/microclimate-model-theory-equations.Rmd
vignettes/microclimate-model-tutorial.Rmd
vignettes/microclimate-monthly-input-example.Rmd
vignettes/microclimate_inputs.Rmd
vignettes/properties-of-air.Rmd
vignettes/transient-equation-derivations.Rmd
