ISpatialDimPlot: Visualize clusters spatially and interactively

In mrod0101/seurat: Tools for Single Cell Genomics

Description

Visualize clusters spatially and interactively

Usage

ISpatialDimPlot(object, image = NULL, group.by = NULL, alpha = c(0.3, 1))

Arguments

object	Seurat object
image	Name of the image to use in the plot
group.by	Name of one or more metadata columns to group (color) cells by (for example, orig.ident); pass 'ident' to group by identity class
alpha	Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object

mrod0101/seurat documentation built on March 2, 2022, 12:17 a.m.