ISpatialFeaturePlot: Visualize features spatially and interactively

In mrod0101/seurat: Tools for Single Cell Genomics

Description

Visualize features spatially and interactively

Usage

ISpatialFeaturePlot(
  object,
  feature,
  image = NULL,
  slot = "data",
  alpha = c(0.1, 1)
)

Arguments

object	Seurat object
feature	Feature to visualize
image	Name of the image to use in the plot
slot	Which slot to pull expression data from?
alpha	Controls opacity of spots. Provide as a vector specifying the min and max for SpatialFeaturePlot. For SpatialDimPlot, provide a single alpha value for each plot.

Value

Returns final plot as a ggplot object

mrod0101/seurat documentation built on March 2, 2022, 12:17 a.m.