API for msettles/rSFFreader
rSFFreader reads in sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers

Global functions
.sffValidity Man page
.solveIRangeSEW Man page
SffHeader Man page
SffHeader-class Man page
SffReads Man page
SffReads-class Man page
SffReadsF Source code
SffReadsQ Man page Source code
SffReadsQ-class Man page
SffReadsQ_subset Source code
SffReads_subset Source code
[,SffReads,ANY,ANY-method Man page
[,SffReads,ANY,missing-method Man page
[,SffReads,missing,ANY-method Man page
[,SffReads,missing,missing-method Man page
[,SffReadsQ,ANY,ANY-method Man page
[,SffReadsQ,ANY,missing-method Man page
[,SffReadsQ,missing,ANY-method Man page
[,SffReadsQ,missing,missing-method Man page
adapterClip Man page
adapterClip,SffReads-method Man page
adapterClip<- Man page
adapterClip<-,SffReads-method Man page
append,SffReads,SffReads,missing-method Man page
append,SffReadsQ,SffReadsQ,missing-method Man page
availableClipModes Man page Source code
class:SffHeader Man page
class:SffReads Man page
class:SffReadsQ Man page
clipMode Man page
clipMode,SffReads-method Man page
clipMode<- Man page
clipMode<-,SffReads-method Man page
customClip Man page
customClip,SffReads-method Man page
customClip<- Man page
customClip<-,SffReads-method Man page
detail,SffHeader-method Man page
detail,SffReads-method Man page
detail,SffReadsQ-method Man page
fixSFFclipPoints2Iranges Source code
fullClip Man page
fullClip,SffReads-method Man page
header Man page
header,SffHeader-method Man page
id,SffReads-method Man page
length,SffReads-method Man page
load454SampleData Man page Source code
loadIonSampleData Man page Source code
name,SffReads-method Man page
names,SffReads-method Man page
names<-,SffReads,ANY-method Man page
quality Man page
quality,ANY-method Man page
qualityClip Man page
qualityClip,SffReads-method Man page
qualityClip<- Man page
qualityClip<-,SffReads-method Man page
rSFFreader Man page
rSFFreader-package Man page
rawClip Man page
rawClip,SffReads-method Man page
readSff Man page Source code
readSffGeometry Man page Source code
readSffHeader Man page Source code
sffValidity Source code
show,SffHeader-method Man page
show,SffReads-method Man page
solveIRangeSEW Source code
solveSffSEW Man page
sread Man page
sread,ANY-method Man page
width,SffReads-method Man page
writeFasta,SffReads-method Man page
writeFastaQual Man page
writeFastaQual,SffReadsQ-method Man page
writeFastq,SffReadsQ,ANY-method Man page
writePhredQual Man page
writePhredQual,FastqQuality-method Man page
writePhredQual,SffReadsQ-method Man page
msettles/rSFFreader documentation built on May 22, 2017, 2:20 p.m.