Man pages for mshakya/rpiret
A package that supports PiReT
| DESeq2_CAplot | Produces CA plot |
| DESeq2FPKM | Calculates FPKM from DESeq2 object |
| DESeq2FPM | Calculates FPM from DESeq2 object |
| DESeq2_histogram | Produces histogram plots based on the FPKM or FPM table |
| DESeq2_summary | Produces CA plot |
| DESeq2_violin | Produces violin plots based on the FPKM/FPM table |
| feat2deseq2 | Creates a DESeq2 object from featurecount table and... |
| FPKM_heatmap | Produces heatmap plots based on the FPKM table |
| FPM_heatmap | Produces heatmap plots based on the FPKM table |
| gage_analysis | Conducts GAGE analysis using fold change data. |
| map_pathway | Gets pathway maps and paints colors based on expression level... |
