DESeq2_violin: Produces violin plots based on the FPKM/FPM table
In mshakya/rpiret: A package that supports PiReT
Description
Usage
Arguments
Value
View source: R/DESeq2_violin.R
Description
Produces violin plots based on the FPKM/FPM table
Usage
1
DESeq2_violin(f_table, exp_desn, outdir, score_type, feature_name)
Arguments
f_table
A csv table with fpm or fpkm, generated using DESeq2FPKM or DESeq2FPM
exp_desn
An experimental design file of PiReT
outdir
A folder to write all the files
score_type
FPM or FPKM
feature_name
name of the feature from gff table that is being counted
Value
creates PDF and PNG figures from FPM/FPKM tables
mshakya/rpiret documentation built on May 26, 2019, 2:31 p.m.
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Description Usage Arguments Value
View source: R/DESeq2_violin.R
Description
Produces violin plots based on the FPKM/FPM table
Usage
1 | DESeq2_violin(f_table, exp_desn, outdir, score_type, feature_name)
|
Arguments
f_table |
A csv table with fpm or fpkm, generated using DESeq2FPKM or DESeq2FPM |
exp_desn |
An experimental design file of PiReT |
outdir |
A folder to write all the files |
score_type |
FPM or FPKM |
feature_name |
name of the feature from gff table that is being counted |
Value
creates PDF and PNG figures from FPM/FPKM tables
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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