Files in mshasan/OPWpaper
Reproduce figures and simulations of OPWeight

.Rbuildignore
.Rhistory
.Rproj.user/DFFC15C1/build_options
.Rproj.user/DFFC15C1/cpp-definition-cache
.Rproj.user/DFFC15C1/pcs/debug-breakpoints.pper
.Rproj.user/DFFC15C1/pcs/files-pane.pper
.Rproj.user/DFFC15C1/pcs/packages-pane.pper
.Rproj.user/DFFC15C1/pcs/source-pane.pper
.Rproj.user/DFFC15C1/pcs/windowlayoutstate.pper
.Rproj.user/DFFC15C1/pcs/workbench-pane.pper
.Rproj.user/DFFC15C1/persistent-state
.Rproj.user/DFFC15C1/rmd-outputs
.Rproj.user/DFFC15C1/saved_source_markers
.Rproj.user/DFFC15C1/sdb/prop/107A311D
.Rproj.user/DFFC15C1/sdb/prop/11827E
.Rproj.user/DFFC15C1/sdb/prop/17005883
.Rproj.user/DFFC15C1/sdb/prop/1777C7E8
.Rproj.user/DFFC15C1/sdb/prop/17ACF8E3
.Rproj.user/DFFC15C1/sdb/prop/1CDF5D3
.Rproj.user/DFFC15C1/sdb/prop/20CA06C9
.Rproj.user/DFFC15C1/sdb/prop/2140C87A
.Rproj.user/DFFC15C1/sdb/prop/26CF7697
.Rproj.user/DFFC15C1/sdb/prop/2994D3D6
.Rproj.user/DFFC15C1/sdb/prop/2D3F762B
.Rproj.user/DFFC15C1/sdb/prop/305DBDE0
.Rproj.user/DFFC15C1/sdb/prop/3213B379
.Rproj.user/DFFC15C1/sdb/prop/32926126
.Rproj.user/DFFC15C1/sdb/prop/35E68BC7
.Rproj.user/DFFC15C1/sdb/prop/387C50D6
.Rproj.user/DFFC15C1/sdb/prop/3BEE283
.Rproj.user/DFFC15C1/sdb/prop/3EE054E5
.Rproj.user/DFFC15C1/sdb/prop/3F602C7D
.Rproj.user/DFFC15C1/sdb/prop/405995C6
.Rproj.user/DFFC15C1/sdb/prop/41EED191
.Rproj.user/DFFC15C1/sdb/prop/44BFDF43
.Rproj.user/DFFC15C1/sdb/prop/48CB04B6
.Rproj.user/DFFC15C1/sdb/prop/4B9C61A9
.Rproj.user/DFFC15C1/sdb/prop/4D21651A
.Rproj.user/DFFC15C1/sdb/prop/511C52E
.Rproj.user/DFFC15C1/sdb/prop/51BE684E
.Rproj.user/DFFC15C1/sdb/prop/57DA662D
.Rproj.user/DFFC15C1/sdb/prop/5D53FB7E
.Rproj.user/DFFC15C1/sdb/prop/60B89F36
.Rproj.user/DFFC15C1/sdb/prop/62534F94
.Rproj.user/DFFC15C1/sdb/prop/66F06ABD
.Rproj.user/DFFC15C1/sdb/prop/7B61F6A2
.Rproj.user/DFFC15C1/sdb/prop/7E3C335D
.Rproj.user/DFFC15C1/sdb/prop/80712FE8
.Rproj.user/DFFC15C1/sdb/prop/85BFAF20
.Rproj.user/DFFC15C1/sdb/prop/86048AC1
.Rproj.user/DFFC15C1/sdb/prop/8853E0E3
.Rproj.user/DFFC15C1/sdb/prop/89E1A8EB
.Rproj.user/DFFC15C1/sdb/prop/8AF56E
.Rproj.user/DFFC15C1/sdb/prop/8B7CBD8B
.Rproj.user/DFFC15C1/sdb/prop/8DFD6EFD
.Rproj.user/DFFC15C1/sdb/prop/9049C07A
.Rproj.user/DFFC15C1/sdb/prop/92C4FD8E
.Rproj.user/DFFC15C1/sdb/prop/96FC4F77
.Rproj.user/DFFC15C1/sdb/prop/98138CC2
.Rproj.user/DFFC15C1/sdb/prop/9B9F697F
.Rproj.user/DFFC15C1/sdb/prop/9C61774
.Rproj.user/DFFC15C1/sdb/prop/A6668F4F
.Rproj.user/DFFC15C1/sdb/prop/A6E729FD
.Rproj.user/DFFC15C1/sdb/prop/A77F390A
.Rproj.user/DFFC15C1/sdb/prop/AC5DA704
.Rproj.user/DFFC15C1/sdb/prop/AE233205
.Rproj.user/DFFC15C1/sdb/prop/B0687827
.Rproj.user/DFFC15C1/sdb/prop/B086022F
.Rproj.user/DFFC15C1/sdb/prop/B6C8401
.Rproj.user/DFFC15C1/sdb/prop/BD8E444B
.Rproj.user/DFFC15C1/sdb/prop/BE46EBCF
.Rproj.user/DFFC15C1/sdb/prop/C87AE6FC
.Rproj.user/DFFC15C1/sdb/prop/CDBAB7C1
.Rproj.user/DFFC15C1/sdb/prop/D4BD24E9
.Rproj.user/DFFC15C1/sdb/prop/D59EE773
.Rproj.user/DFFC15C1/sdb/prop/D672AE0B
.Rproj.user/DFFC15C1/sdb/prop/D7A038C0
.Rproj.user/DFFC15C1/sdb/prop/DAD0BD89
.Rproj.user/DFFC15C1/sdb/prop/DC47634A
.Rproj.user/DFFC15C1/sdb/prop/EA170019
.Rproj.user/DFFC15C1/sdb/prop/F346F99F
.Rproj.user/DFFC15C1/sdb/prop/F3571239
.Rproj.user/DFFC15C1/sdb/prop/F3EFD9E9
.Rproj.user/DFFC15C1/sdb/prop/INDEX
.Rproj.user/DFFC15C1/session-persistent-state
.Rproj.user/F10DC1CA/build_options
.Rproj.user/F10DC1CA/cpp-definition-cache
.Rproj.user/F10DC1CA/pcs/debug-breakpoints.pper
.Rproj.user/F10DC1CA/pcs/files-pane.pper
.Rproj.user/F10DC1CA/pcs/packages-pane.pper
.Rproj.user/F10DC1CA/pcs/source-pane.pper
.Rproj.user/F10DC1CA/pcs/windowlayoutstate.pper
.Rproj.user/F10DC1CA/pcs/workbench-pane.pper
.Rproj.user/F10DC1CA/persistent-state
.Rproj.user/F10DC1CA/rmd-outputs
.Rproj.user/F10DC1CA/saved_source_markers
.Rproj.user/F10DC1CA/sdb/prop/10218440
.Rproj.user/F10DC1CA/sdb/prop/10FC7A06
.Rproj.user/F10DC1CA/sdb/prop/116FCAC9
.Rproj.user/F10DC1CA/sdb/prop/23F696CA
.Rproj.user/F10DC1CA/sdb/prop/2762B8B2
.Rproj.user/F10DC1CA/sdb/prop/2CB2C773
.Rproj.user/F10DC1CA/sdb/prop/2FEAACDA
.Rproj.user/F10DC1CA/sdb/prop/3123D868
.Rproj.user/F10DC1CA/sdb/prop/379061F5
.Rproj.user/F10DC1CA/sdb/prop/425934DB
.Rproj.user/F10DC1CA/sdb/prop/45237935
.Rproj.user/F10DC1CA/sdb/prop/575725A7
.Rproj.user/F10DC1CA/sdb/prop/579FAD2F
.Rproj.user/F10DC1CA/sdb/prop/587047A0
.Rproj.user/F10DC1CA/sdb/prop/5F23CA45
.Rproj.user/F10DC1CA/sdb/prop/628981AF
.Rproj.user/F10DC1CA/sdb/prop/6302E492
.Rproj.user/F10DC1CA/sdb/prop/650DA8A6
.Rproj.user/F10DC1CA/sdb/prop/67960363
.Rproj.user/F10DC1CA/sdb/prop/68E8734E
.Rproj.user/F10DC1CA/sdb/prop/6AD167E5
.Rproj.user/F10DC1CA/sdb/prop/6ADA7597
.Rproj.user/F10DC1CA/sdb/prop/76F5F892
.Rproj.user/F10DC1CA/sdb/prop/7C8C70E
.Rproj.user/F10DC1CA/sdb/prop/81FA7B4F
.Rproj.user/F10DC1CA/sdb/prop/823E4E27
.Rproj.user/F10DC1CA/sdb/prop/84B82780
.Rproj.user/F10DC1CA/sdb/prop/8839549E
.Rproj.user/F10DC1CA/sdb/prop/AE8CAFAE
.Rproj.user/F10DC1CA/sdb/prop/AFA25FDA
.Rproj.user/F10DC1CA/sdb/prop/B474C365
.Rproj.user/F10DC1CA/sdb/prop/BA3E2D86
.Rproj.user/F10DC1CA/sdb/prop/BA9217E6
.Rproj.user/F10DC1CA/sdb/prop/BB2A97A5
.Rproj.user/F10DC1CA/sdb/prop/C00C61E4
.Rproj.user/F10DC1CA/sdb/prop/C3736BF9
.Rproj.user/F10DC1CA/sdb/prop/CADFA391
.Rproj.user/F10DC1CA/sdb/prop/D542BA7E
.Rproj.user/F10DC1CA/sdb/prop/DB44AE4C
.Rproj.user/F10DC1CA/sdb/prop/E01D6488
.Rproj.user/F10DC1CA/sdb/prop/E207D66B
.Rproj.user/F10DC1CA/sdb/prop/E4C2ADC9
.Rproj.user/F10DC1CA/sdb/prop/E7BF5B19
.Rproj.user/F10DC1CA/sdb/prop/EF1F57B5
.Rproj.user/F10DC1CA/sdb/prop/EF4D28C
.Rproj.user/F10DC1CA/sdb/prop/FE0A0C20
.Rproj.user/F10DC1CA/sdb/prop/INDEX
.Rproj.user/F10DC1CA/session-persistent-state
.Rproj.user/shared/notebooks/paths
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
OPWpaper.Rproj
R/fwerPowerFdrPower.R R/nice_plots.R R/probRel_CovVsTest_effect.R R/prob_weight_plots.R R/ranksProb_byEffect.R R/ranksProb_compare.R R/ranksProb_compare_plots.R R/roeder_wasserman_weight.R R/runif_by_mean.R R/simu_fwer.R R/test_by_block.R R/weight_byEffect_bin.R R/weight_byEffect_cont.R README.md
inst/exdata/bottomly_count_table.txt
inst/exdata/bottomly_phenodata.txt
inst/exdata/science_signaling.csv
inst/real_data_examples/bottomly_data_example.R inst/real_data_examples/proteomics_data_example.R inst/real_data_examples/readme.md
inst/real_data_examples/results/bottomly_data_example.RDATA
inst/real_data_examples/results/bottomly_data_example.png
inst/real_data_examples/results/proteomics_data_example.RDATA
inst/real_data_examples/results/proteomics_data_example.png
inst/simulations/results/ranksProb_byEffect_m10000.csv
inst/simulations/results/simu_fwer.RData
inst/simulations/results/simu_fwerPowerFdrPower_bin.RData
inst/simulations/results/simu_fwerPowerFdrPower_cont.RData
inst/simulations/results/simu_fwerPowerFdrPower_missVar_bin.RData
inst/simulations/results/simu_fwerPowerFdrPower_missVar_cont.RData
inst/simulations/results/simu_probRel_CovVsTest_effect.RData
inst/simulations/results/simu_prob_rank_givenEffect.RData
inst/simulations/results/weight_byEffect_bin_m10000.csv
inst/simulations/results/weight_byEffect_cont_m10000.csv
inst/simulations/simu_fwer.R inst/simulations/simu_fwerPowerFdrPower.R inst/simulations/simu_fwerPowerFdrPower_plots.R inst/simulations/simu_probRel_CovVsTest_effect.R inst/simulations/simu_probRel_CovVsTest_effect_plots.R inst/simulations/simu_prob_weight_plots.R inst/simulations/simu_ranksProb_byEffect.R inst/simulations/simu_ranksProb_compare.R inst/simulations/simu_ranksProb_compare_plots.R inst/simulations/simu_weight_byEffect_bin.R inst/simulations/simu_weight_byEffect_cont.R man/fwerPowerFdrPower.Rd man/nice_plots.Rd man/probRel_CovVsTest_effect.Rd man/prob_weight_plots.Rd man/ranksProb_byEffect.Rd man/ranksProb_compare.Rd man/ranksProb_compare_plots.Rd man/roeder_wasserman_weight.Rd man/runif_by_mean.Rd man/simu_fwer.Rd man/test_by_block.Rd man/weightSum_by_c.Rd man/weight_byEffect_bin.Rd man/weight_byEffect_cont.Rd tests/testthat.R tests/testthat/test_by_block.R tests/testthat/test_fwerPowerFdrPower.R tests/testthat/test_nice_plots.R tests/testthat/test_probRel_filterVstest_effect.R tests/testthat/test_prob_weight_plots.R tests/testthat/test_ranksProb_byEffect.R tests/testthat/test_ranksProb_compare.R tests/testthat/test_ranksProb_compare_plots.R tests/testthat/test_roeder_wasserman_weight.R tests/testthat/test_runif_by_mean.R tests/testthat/test_simu_fwer.R tests/testthat/weight_byEffect_bin.R tests/testthat/weight_byEffect_cont.R vignettes/FWER_and_FDR.R vignettes/FWER_and_FDR.Rmd
vignettes/FWER_and_FDR.html
vignettes/Power.R vignettes/Power.Rmd
vignettes/Power.html
vignettes/bibliography.bib
vignettes/filterEffect_testEffect.R vignettes/probRel_CovVsTest_effect.R vignettes/probRel_CovVsTest_effect.Rmd
vignettes/probRel_CovVsTest_effect.html
vignettes/ranksProb_weight.R vignettes/ranksProb_weight.Rmd
vignettes/ranksProb_weight.html
vignettes/ranks_probability.R vignettes/ranks_probability.Rmd
vignettes/ranks_probability.html
vignettes/real_data_examples.R vignettes/real_data_examples.Rmd
vignettes/real_data_examples.html
mshasan/OPWpaper documentation built on Aug. 14, 2017, 6:41 a.m.