bambi-package: An R interface for querying indexed binary sequence data

In mskilab/bambi: R to query barcode indices on bam files

Description

This package provides functions to query binary alignment https://samtools.github.io/hts-specs/SAMv1.pdf files that have been indexed with the bamdb software package.

Author(s)

Maintainer: Aaron Dornbrand-Lo

See Also

The bamdb library that this package extends currently lives at https://github.com/D-Lo/bamdb.

Examples

  ## Not run: 
  results = query_bam_index("sample_bam_file.bam", "/home/adornbrandlo/sample_bam_index", "BX", "CCGATAAGTGATGTGG-1")
  
## End(Not run)

mskilab/bambi documentation built on May 14, 2019, 4:04 a.m.