motivation explanation queries WGS and SS 10x BAMs
A process
object.
Character scalar, the command to run. It will be
escaped via shQuote
.
Character vector, arguments to the command. The will be
escaped via shQuote
.
A character scalar, a full command line. No escaping will be performed on it.
What to do with the standard output. Possible values:
FALSE
: discard it; a string, redirect it to this file,
TRUE
: redirect it to a temporary file.
What to do with the standard error. Possible values:
FALSE
: discard it; a string, redirect it to this file,
TRUE
: redirect it to a temporary file.
Grace pediod between the TERM and KILL signals, in seconds.
Extra arguments are passed to the
readLines
function.
$grab_bx()
grab BX tags (if exist)
grab_bx = function(query, data.table = FALSE, verbose = FALSE, mc.cores = 1)
$grab_cb()
grab CB tags (if exist)
grab_cb = function(query, data.table = FALSE, verbose = FALSE, mc.cores = 1)
$grab_ub()
grab CB tags (if exist)
grab_ub = function(query, data.table = FALSE, verbose = FALSE, mc.cores = 1)
$fetch_by_tag()
grab CB tags (if exist)
fetch_by_tag = function(tag, query, data.table = FALSE, verbose = FALSE, mc.cores = 1)
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