Files in mskilab/gTrack
Plotting multiple tracks of complex genomic data across multiple genomic windows
.Rbuildignore
.github/workflows/check-release.yaml
.github/workflows/pkgdown.yaml
.github/workflows/test-coverage.yaml
.github/workflows/test-only.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/gTrack.R
README.md
codecov.yml
docs/404.html
docs/articles/gtrackparams.html
docs/articles/gtrackparams_files/figure-html/unnamed-chunk-10-1.png
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docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/affine-map-methods.html
docs/reference/alpha.html
docs/reference/barbs.html
docs/reference/bernsteinp.html
docs/reference/blend.html
docs/reference/brewer.master.html
docs/reference/c-methods.html
docs/reference/cash-methods.html
docs/reference/cash-set-methods.html
docs/reference/clear-methods.html
docs/reference/clip_polys.html
docs/reference/col.scale.html
docs/reference/color.bar.html
docs/reference/colormap-methods.html
docs/reference/colormap-set-methods.html
docs/reference/connectors.html
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docs/reference/dedup.html
docs/reference/diamond.html
docs/reference/draw.grl.html
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docs/reference/gTrack-class.html
docs/reference/gr.flatmap.html
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docs/reference/karyogram.html
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docs/reference/mdata-methods.html
docs/reference/plot.blank.html
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docs/reference/standardize_segs.html
docs/reference/sub-methods.html
docs/reference/track.gencode.html
docs/reference/triangle.html
docs/reference/vaggregate.html
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docs/sitemap.xml
inst/extdata/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.hg18.seg.txt
inst/extdata/BEAUX_p_TCGA_b109_SNP_2N_GenomeWideSNP_6_A01_772082.hg19.seg.txt
inst/extdata/graph.rds
inst/extdata/junctions.rds
inst/extdata/load_test_data.R
inst/extdata/ovcar.subgraph.chr.rds
inst/extdata/ovcar.subgraph.coverage.chr.rds
inst/extdata/ovcar.subgraph.coverage.rds
inst/extdata/ovcar.subgraph.edges.dat.rds
inst/extdata/ovcar.subgraph.edges.gr.rds
inst/extdata/ovcar.subgraph.hic.rds
inst/extdata/ovcar.subgraph.mdata.gr.rds
inst/extdata/ovcar.subgraph.mdata.mat.rds
inst/extdata/ovcar.subgraph.rds
inst/extdata/ovcar.subgraph.reads.rds
inst/extdata/ovcar.subgraph.walks.rds
inst/extdata/test_data/bigtest_sub.bed
inst/extdata/test_data/bigtest_sub.bedgraph
inst/extdata/test_data/bigtest_sub.bw
inst/extdata/test_data/coverage_bars_gt.rds
inst/extdata/test_data/coverage_gt.rds
inst/extdata/test_data/coverage_gt_rd.rds
inst/extdata/test_data/coverage_lines_gt.rds
inst/extdata/test_data/edges_gt.rds
inst/extdata/test_data/gencode.composite.collapsed.rds
inst/extdata/test_data/gencode.composite.rds
inst/extdata/test_data/gencode_test.gff
inst/extdata/test_data/gencode_test.gff.old
inst/extdata/test_data/gencode_test.gff3
inst/extdata/test_data/gm_gt.rds
inst/extdata/test_data/heatmap_gt.rds
inst/extdata/test_data/minus_coverage_gt.rds
inst/extdata/test_data/plus_coverage_gt.rds
inst/extdata/test_data/reads_gt.rds
inst/extdata/test_data/smallHCC1143BL.bam
inst/extdata/test_data/smallHCC1143BL.bam.bai
inst/extdata/ucsc.bands.hg18.rds
inst/extdata/ucsc.bands.hg19.rds
knitr_figure/minimal-boring-plots-1.pdf
knitr_figure/minimal-boring-plots-2.pdf
knitr_figure/minimal-test-gTrack-1.pdf
man/affine-map-methods.Rd
man/alpha.Rd
man/barbs.Rd
man/bernsteinp.Rd
man/blend.Rd
man/brewer.master.Rd
man/c-methods.Rd
man/cash-methods.Rd
man/cash-set-methods.Rd
man/clear-methods.Rd
man/clip_polys.Rd
man/col.scale.Rd
man/color.bar.Rd
man/colormap-methods.Rd
man/colormap-set-methods.Rd
man/connectors.Rd
man/dat-methods.Rd
man/dedup.Rd
man/diamond.Rd
man/draw.grl.Rd
man/draw.ranges.Rd
man/draw.triangle.Rd
man/edgs-methods.Rd
man/edgs-set-methods.Rd
man/formatting-methods.Rd
man/formatting-set-methods.Rd
man/gTrack-class.Rd
man/gr.flatmap.Rd
man/karyogram.Rd
man/length-methods.Rd
man/lighten.Rd
man/mdata-methods.Rd
man/plot.blank.Rd
man/plot.gTrack.Rd
man/readData.Rd
man/reduce-methods.Rd
man/rrbind.Rd
man/sep-methods.Rd
man/seqinfo-set-methods.Rd
man/seqinfo.Rd
man/show-methods.Rd
man/standardize_segs.Rd
man/sub-methods.Rd
man/track.gencode.Rd
man/triangle.Rd
man/vaggregate.Rd
man/vars.Rd
man/xaxis-methods.Rd
minimal.Rnw
minimal.pdf
old.travis.yml
raw.prm
rtdocs/Makefile
rtdocs/basic.rst
rtdocs/conf.py
rtdocs/figures/deletions.png
rtdocs/figures/deletions2.png
rtdocs/figures/tcga5windows.png
rtdocs/figures/tcgabrcacnvAMPS.png
rtdocs/figures/tcgabrcacnvDELS.png
rtdocs/figures/tcgabrcacnvpatients.png
rtdocs/figures/tcgatoomanywindows.png
rtdocs/figures/ygap.png
rtdocs/index.rst
rtdocs/make.bat
rtdocs/rsconnect/documents/DSvignette.Rmd/rpubs.com/rpubs/Publish Document.dcf
rtdocs/super_enhancers/figure/bigWig-1.png
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tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test_gTrack.R
tests/testthat/test_gTrack.R.old
vignettes/gtrackparams.rmd
vignettes/quickstart.rmd
