draw.ranges: draw.ranges

In mskilab/gTrack: Plotting multiple tracks of complex genomic data across multiple genomic windows

draw.ranges

Description

Draws (genomic, Iranges, Rle, or df with start and end field) intervals as rectangles of thickness "lwd", col "col".

If "col" or "y" are set to null then will examine "x" to see if the respective fields are contained within (e.g. as RangedData or data.frame)

Adds optional backbone between beginning of first range and end of last on existing plot

Usage

draw.ranges(
  x,
  y = NULL,
  lwd = 0.5,
  col = "black",
  border = col,
  label = NULL,
  draw.backbone = F,
  group = NULL,
  col.backbone = col[1],
  cex.label = 1,
  srt.label = 45,
  adj.label = c(0.5, 0),
  angle,
  circles = FALSE,
  bars = FALSE,
  points = NA,
  lines = FALSE,
  y0.bar = NULL,
  strand.dir = T,
  xlim = NULL,
  ylim = NULL,
  clip = NULL,
  lwd.border = 1,
  lwd.backbone = 1,
  verbose = FALSE,
  ...
)

Author(s)

Marcin Imielinski

mskilab/gTrack documentation built on Aug. 17, 2024, 6:10 a.m.