karyogram: karyogram

In mskilab/gTrack: Plotting multiple tracks of complex genomic data across multiple genomic windows

karyogram

Description

Returns gTrack displaying band pattern for hg18 or hg19 karyotype

Usage

karyogram(
  file = NULL,
  hg19 = TRUE,
  bands = TRUE,
  arms = TRUE,
  tel.width = 2e+06,
  ...
)

Arguments

hg19	logical scalar flag, if T returns gTrack for hg19
bands	logical scalar, if T returns gTrack with colored giemsa bands
arms	logical scalar, if T and bands F, returns chromosome arms with different colors and centromeres and telomeres marked, if arms is F and bands F returns chromosomes, each with a different color
tel.width	numeric scalar, specifies telomere width in bases (only relevant if arms = T, bands = F)
...	Additional arguments sent to the gTrack constructor

Author(s)

Marcin Imielinski

mskilab/gTrack documentation built on Aug. 17, 2024, 6:10 a.m.