API for mskilab/loosends
Classifying loose ends in gGraphs
| Global functions | |
|---|---|
| .sample.spec2 | Man page Source code |
| add_contig_ctypes | Man page Source code |
| align_contigs | Man page |
| bowtie_aln | Man page Source code |
| bowtie_index | Man page |
| build_contigs | Man page |
| build_contigs_wrapper | Man page Source code |
| build_pseudo_contigs | Man page |
| call_loose_end2 | Man page Source code |
| check_contig_concordance | Man page Source code |
| check_contig_support_wrapper | Man page Source code |
| check_contigs_for_telomeres | Man page Source code |
| check_distal_only_contig_support | Man page Source code |
| check_file | Man page Source code |
| check_split_contig_support | Man page Source code |
| eighteenmer | Man page Source code |
| eighteenmer_from_fasta | Source code |
| find_telomeres | Man page Source code |
| find_telomeres2 | Source code |
| grab_contig_breakends | Man page |
| grab_contig_breakends_wrapper | Man page |
| grab_distal_breakends | Man page Source code |
| grab_looseread_params | Man page Source code |
| grab_loosereads | Man page Source code |
| grab_seed_frame | Man page |
| has_chr | Man page Source code |
| label_contigs | Man page |
| loose.reads2 | Man page Source code |
| loosereads_wrapper | Man page Source code |
| minimap_index | Man page Source code |
| munch | Man page Source code |
| parse_realignment | Man page Source code |
| prep_loose_ends | Man page Source code |
| prep_loose_reads | Man page Source code |
| process_loose_ends | Man page Source code |
| qc_contigs | Man page |
| qc_single_contig | Man page |
| read_support | Man page Source code |
| read_support_wrapper | Man page Source code |
| realign_loosereads | Man page Source code |
| seqs_to_fasta | Man page |
