grab_loosereads: grab_loosereads
In mskilab/loosends: Classifying loose ends in gGraphs
grab_loosereads R Documentation
grab_loosereads
Description
get the reads + mates associated with loose ends
Usage
grab_loosereads(
bam = NA_character_,
ranges = GRanges(),
qnames = character(),
outdir = "./",
overwrite = TRUE,
verbose = TRUE
)
Arguments
bam
(character) path to BAM file
ranges
(GRanges)
qnames
(character)
outdir
(character) path to dump results
overwrite
(logical) overwrite existing files? default TRUE
verbose
(logical) default FALSE
Value
path to indexed BAM file with all required reads
mskilab/loosends documentation built on Aug. 24, 2023, 8:08 a.m.
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| grab_loosereads | R Documentation |
grab_loosereads
Description
get the reads + mates associated with loose ends
Usage
grab_loosereads(
bam = NA_character_,
ranges = GRanges(),
qnames = character(),
outdir = "./",
overwrite = TRUE,
verbose = TRUE
)
Arguments
bam |
(character) path to BAM file |
ranges |
(GRanges) |
qnames |
(character) |
outdir |
(character) path to dump results |
overwrite |
(logical) overwrite existing files? default TRUE |
verbose |
(logical) default FALSE |
Value
path to indexed BAM file with all required reads
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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