Man pages for mskilab/loosends
Classifying loose ends in gGraphs
| add_contig_ctypes | add_contig_ctypes |
| align_contigs | align_contigs |
| bowtie_aln | bowtie_aln |
| bowtie_index | bowtie_index |
| build_contigs | build_contigs |
| build_contigs_wrapper | build_contigs_wrapper |
| build_pseudo_contigs | build_pseudo_contigs |
| call_loose_end2 | call_loose_end2 |
| check_contig_concordance | check_contig_concordance |
| check_contigs_for_telomeres | check_contigs_for_telomeres |
| check_contig_support_wrapper | check_contig_support_wrapper |
| check_distal_only_contig_support | check_distal_only_contig_support |
| check_file | check_file |
| check_split_contig_support | check_split_contig_support |
| dot-sample.spec2 | .sample.spec2 |
| eighteenmer | eighteenmer |
| find_telomeres | find_telomeres |
| grab_contig_breakends | grab_contig_breakends |
| grab_contig_breakends_wrapper | grab_contig_breakends_wrapper |
| grab_distal_breakends | grab_distal_breakends |
| grab_looseread_params | grab_looseread_params |
| grab_loosereads | grab_loosereads |
| grab_seed_frame | grab_seed_frame |
| has_chr | has_chr |
| label_contigs | label_contigs |
| loose.reads2 | loose.reads2 |
| loosereads_wrapper | loosereads_wrapper |
| minimap_index | minimap_index |
| munch | munch |
| parse_realignment | parse_realignment |
| prep_loose_ends | prep_loose_ends |
| prep_loose_reads | prep_loose_reads Get loose reads data table ready for... |
| process_loose_ends | process_loose_ends |
| qc_contigs | qc_contigs |
| qc_single_contig | qc_single_contig |
| read_support | read_support |
| read_support_wrapper | read_support_wrapper |
| realign_loosereads | realign_loosereads |
| seqs_to_fasta | seqs_to_fasta |
