Files in mstaniak/SharedPeptidesIso

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/IsoAPQModel.R R/IsoAPQModelDesign.R R/SharedPeptidesIso.R R/utils_analytical_gradient_fixed.R R/utils_analytical_gradient_full.R R/utils_analytical_gradient_random.R R/utils_log_likelihood_random.R R/utils_loglikelihood_fixed.R R/utils_loglikelihood_full.R R/utils_model_design.R R/utils_model_fit.R

SharedPeptidesIso.Rproj

_pkgdown.yml

data/mouse_cluster.rda

data/mouse_cluster_unique.rda

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/index.html

docs/articles/mouse_cluster_analysis.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/add_effect_counts.html

docs/reference/add_independent_unit.html

docs/reference/add_protein_design.html

docs/reference/add_response.html

docs/reference/apqgmodel-methods.html

docs/reference/apqmodel-methods.html

docs/reference/apqmodeldesign-methods.html

docs/reference/fit_iso_full_model.html

docs/reference/get_candidate_formula.html

docs/reference/get_design_matrices.html

docs/reference/get_empty_design.html

docs/reference/get_fixed_design.html

docs/reference/get_full_design.html

docs/reference/get_full_model_information.html

docs/reference/get_gradient_full.html

docs/reference/get_gradient_full_unit.html

docs/reference/get_hessian.html

docs/reference/get_iso_full_gradient.html

docs/reference/get_iso_full_loglikelihood.html

docs/reference/get_neglog_full.html

docs/reference/get_neglog_full_unit.html

docs/reference/get_protein_matrix.html

docs/reference/get_random_design.html

docs/reference/index.html

docs/reference/isoapqmodel.html

docs/reference/isoapqmodeldesign.html

docs/reference/parse_formula.html

inst/tinytest/test_SharedPeptidesIso.R inst/tinytest/test_analytical_gradient.R inst/tinytest/test_design_matrices.R inst/tinytest/test_likelihood.R man/add_effect_counts.Rd man/add_independent_unit.Rd man/add_protein_design.Rd man/add_response.Rd man/apqgmodel-methods.Rd man/apqmodel-methods.Rd man/apqmodeldesign-methods.Rd man/fit_iso_fixed_model.Rd man/fit_iso_full_model.Rd man/fit_iso_random_model.Rd man/get_candidate_formula.Rd man/get_design_matrices.Rd man/get_empty_design.Rd man/get_fixed_design.Rd man/get_full_design.Rd man/get_full_model_information.Rd man/get_gradient_fixed.Rd man/get_gradient_full.Rd man/get_gradient_full_unit.Rd man/get_gradient_random.Rd man/get_gradient_random_unit.Rd man/get_hessian.Rd man/get_iso_fixed_gradient.Rd man/get_iso_fixed_loglikelihood.Rd man/get_iso_full_gradient.Rd man/get_iso_full_loglikelihood.Rd man/get_iso_random_gradient.Rd man/get_iso_random_loglikelihood.Rd man/get_neglog_fixed.Rd man/get_neglog_full.Rd man/get_neglog_full_unit.Rd man/get_neglog_random.Rd man/get_neglog_random_unit.Rd man/get_protein_matrix.Rd man/get_random_design.Rd man/get_random_model_information.Rd man/isoapqmodel.Rd man/isoapqmodeldesign.Rd man/parse_formula.Rd tests/tinytest.R

vignettes/.gitignore

vignettes/mouse_cluster_analysis.Rmd

mstaniak/SharedPeptidesIso documentation built on Dec. 21, 2021, 10:11 p.m.

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