makeHCdendrogram: Plot HC dendrogram

In msxakk89/dat: Data Analyst Toolkit (dat): a library of tools for data analysts and scientists

Description

Plot HC dendrogram given a data frame.

Usage

makeHCdendrogram(
  df,
  sample_to_color_map,
  method_distance = "euclidean",
  method_agglomeration = "complete",
  main = "hierarchical clustering dendrogram"
)

Arguments

df	A data frame on which PCA plot is based.
sample_to_color_map	A data frame mapping sample names to color. Make sure the order of row of 'sample_to_color_map' is the same as order of columns in 'df'. Make sure there is column named 'color'.
method_distance	A character of method for calculating distances between samples. Defaults to "euclidean". Can also be one of:"maximum", "manhattan", "canberra", "binary", "minkowski", "pearson", "kendall", "spearman". The last free are derived from fdistColPearson() function.
method_agglomeration	A character of sample clustering method. Defaults to "complete" (i.e. complete linkage algorithm). Can also be one of: "ward.D", "ward.D2", "single","average","mcquitty","median","centroid". See ?hclust for more info.

Value

A HC dendrogram

msxakk89/dat documentation built on Aug. 3, 2020, 6:39 p.m.