Description Usage Arguments Value
Construct (but do not fit) an mbm model
| 1 2 3 | make_mbm(y, x, y_name, link, likelihood, lengthscale, sparse,
  force_increasing, sparse_inducing = 10, sparse_batch = 10,
  sparse_iter = 10000)
 | 
| y | Square dissimilarity or distance matrix, can be complete or lower triangular 
only. Row and column names are required and must match the site names in the 
rows of  | 
| x | Matrix giving a series of covariates (in columns) for all sites (in rows). Row names are required. All variables will be included in the model. | 
| y_name | A name to give to the y variable | 
| link | Link function to use | 
| likelihood | Likelihood function to use | 
| lengthscale | Either missing (in which case all lengthscales will be optimized) or
a numeric vector of length  | 
| sparse | Should we use the stochastic variational GP. | 
| force_increasing | Boolean; if true, beta diversity will be constrained to increase with environmental distance | 
| sparse_inducing | Number of inducing inputs to use for the svgp | 
| sparse_batch | Batchsize to use for the svgp | 
| sparse_iter | Maximum number of optimizer iterations for svgp | 
An mbm object
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