phylosor: Phylogenetic sorensen dissimilarity index
In mtalluto/mbm: Multifaceted Biodiversity Modelling
Description
Usage
Arguments
Value
References
Description
Phylogenetic sorensen dissimilarity index
Usage
1
Arguments
comm
Community matrix giving sites (rows) by species (columns).
tree
Dendrogram of class phylo
partition
Logical; if true, the index will be partitioned into turnover and
nestedness.
Value
If partition == TRUE, list of three matrices giving the turnover,
nestedness, and total components of dissimilarity. Otherwise, a matrix of
pairwise dissimilarity values between communities.
References
Pavoine, S. and Ricotta, C. 2014. Functional and phylogenetic similarity
among communities. Methods in Ecology and Evolution 5(7): 666–675.
mtalluto/mbm documentation built on Aug. 13, 2019, 9:43 a.m.
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Description Usage Arguments Value References
Description
Phylogenetic sorensen dissimilarity index
Usage
1 |
Arguments
comm |
Community matrix giving sites (rows) by species (columns). |
tree |
Dendrogram of class |
partition |
Logical; if true, the index will be partitioned into turnover and nestedness. |
Value
If partition == TRUE, list of three matrices giving the turnover,
nestedness, and total components of dissimilarity. Otherwise, a matrix of
pairwise dissimilarity values between communities.
References
Pavoine, S. and Ricotta, C. 2014. Functional and phylogenetic similarity among communities. Methods in Ecology and Evolution 5(7): 666–675.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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