plot.PCSF: Plot an interactive subnetwork
In murodzhon/PCSF: Network-based interpretation of highthroughput data

Description Usage Arguments Details Author(s) See Also Examples

plot.PCSF plots an interactive figure of the subnetwork obrained by the PCSF method.

## S3 method for class 'PCSF'
plot(x, style = 0, edge_width = 5, node_size = 40,
  node_label_cex = 30, Steiner_node_color = "lightblue",
  Terminal_node_color = "lightgreen", ...)

`x`	A subnetwork obtained by the PCSF method. It is a "PCSF" object derived from igraph class and it has the edge cost and vertex prize attributes.
`style`	A `boolean` value to determine the visualization style of the network, where `0` plots the `static` network and `1` plots the `dynamic` network. The default valu is 0.
`edge_width`	A `numeric` value to emphasize the maximum edge width. A default value is 5. This value must be greater than 1.
`node_size`	A `numeric` value to emphasize the maximum node size. A default value is 40. This value must be greater than 10.
`node_label_cex`	A `numeric` value to set the node label size. A default value is 30.
`Steiner_node_color`	A `string` to set the color of `Steiner` nodes. A default value is "lightblue".
`Terminal_node_color`	A `string` to set the color of `terminal` nodes. A default value is "lightgreen".
`...`	Ignored.

This function plots an interactive subnetwork obtained by the PCSF and PCSF_rand. The node sizes and edge widths are respectively proportional to the node prizes and edge costs while plotting the subnetwork from PCSF. In contrast, the node sizes and edge widths are proportional to the total number of abondance in randomized runs while plotting the subnetwork from PCSF_rand. The node names are displayed during the hover-over.

Murodzhon Akhmedov

PCSF, plot.PCSFe

## Not run: 
library("PCSF")
data("STRING")
data("Tgfb_phospho")
terminals <- Tgfb_phospho
ppi <- construct_interactome(STRING)
subnet <- PCSF(ppi, terminals, w = 2, b = 1, mu = 0.0005)
plot(subnet)
## End(Not run)