Files in muschellij2/ENARSC2015
ENAR 2015 Short Course

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
ENAR_SC_2015.Rproj
NAMESPACE
R/ENARSC2015-package.R R/ants_pipeline.R R/bias_correct.R R/copy_data.R R/dcm2nii.R R/fsl_pipeline.R R/hox_subcort.R README.md
WebGL/CanvasMatrix.js
WebGL/index.html
WebGL/snapshot.png
data/Atlas_Labels.rda
inst/ANTsR/FLAIR_ANTsR_N3Correct.nii.gz
inst/ANTsR/FLAIR_ANTsR_N3Correct_regMNI_SyN.nii.gz
inst/ANTsR/ROI_regMNI_SyN.nii.gz
inst/ANTsR/ROI_threshold_regMNI_SyN.nii.gz
inst/ANTsR/T1_ANTsR_N3Correct.nii.gz
inst/ANTsR/T1_ANTsR_N3Correct_regFLAIR.nii.gz
inst/ANTsR/T2_ANTsR_N3Correct.nii.gz
inst/ANTsR/ants0GenericAffine.mat
inst/BRAINIX/DICOM/FLAIR/IM-0001-0001.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0002.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0003.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0004.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0005.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0006.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0007.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0008.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0009.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0010.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0011.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0012.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0013.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0014.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0015.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0016.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0017.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0018.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0019.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0020.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0021.dcm
inst/BRAINIX/DICOM/FLAIR/IM-0001-0022.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0001.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0002.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0003.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0004.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0005.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0006.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0007.dcm
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inst/BRAINIX/DICOM/ROI/IM-0001-0009.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0010.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0011.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0012.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0013.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0014.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0015.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0016.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0017.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0018.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0019.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0020.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0021.dcm
inst/BRAINIX/DICOM/ROI/IM-0001-0022.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0001.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0002.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0003.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0004.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0005.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0006.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0007.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0008.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0009.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0010.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0011.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0012.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0013.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0014.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0015.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0016.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0017.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0018.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0019.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0020.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0021.dcm
inst/BRAINIX/DICOM/T1/IM-0001-0022.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0001.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0002.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0003.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0004.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0005.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0006.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0007.dcm
inst/BRAINIX/DICOM/T2/IM-0001-0008.dcm
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inst/BRAINIX/NIfTI/T2.nii.gz
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inst/FSL/FLAIR_FSL_N3Correct_BET.nii.gz
inst/FSL/FLAIR_FSL_N3Correct_regMNI.nii.gz
inst/FSL/FLAIR_FSL_N3Correct_regMNI_FNIRT.nii.gz
inst/FSL/MNI152_T1_1mm.nii.gz
inst/FSL/MNI152_T1_1mm_brain.nii.gz
inst/FSL/ROI.nii.gz
inst/FSL/ROI_regMNI.nii.gz
inst/FSL/ROI_regMNI_FNIRT.nii.gz
inst/FSL/ROI_threshold_regMNI_FNIRT.nii.gz
inst/FSL/T1_FSL_N3Correct.nii.gz
inst/FSL/T1_FSL_N3Correct_BET.nii.gz
inst/FSL/T1_FSL_N3Correct_BET_regFLAIR.mat
inst/FSL/T1_FSL_N3Correct_BET_regFLAIR.nii.gz
inst/FSL/T1_FSL_N3Correct_regFLAIR.mat
inst/FSL/T1_FSL_N3Correct_regFLAIR.nii.gz
inst/FSL/T1_FSL_N3Correct_regFLAIR_regMNI.nii.gz
inst/FSL/T1_FSL_N3Correct_regFLAIR_regMNI_FNIRT.nii.gz
inst/FSL/T1_FSL_N3Correct_regFLAIR_regMNI_FNIRT_coeff.nii.gz
inst/FSL/T1_FSL_N3Correct_regFLAIR_regMNI_to_MNI152_T1_1mm.log
inst/FSL/T2_FSL_N3Correct.nii.gz
inst/FSL/T2_FSL_N3Correct_BET.nii.gz
inst/FSL/T2_FSL_N3Correct_BET_regFLAIR.mat
inst/FSL/T2_FSL_N3Correct_BET_regFLAIR.nii.gz
inst/FSL/T2_FSL_N3Correct_regFLAIR.mat
inst/FSL/T2_FSL_N3Correct_regFLAIR.nii.gz
inst/FSL/T2_FSL_N3Correct_regFLAIR_regMNI.nii.gz
inst/FSL/T2_FSL_N3Correct_regFLAIR_regMNI_FNIRT.nii.gz
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inst/Kirby21/SUBJ0001-01-MPRAGE_N3.nii.gz
inst/Kirby21/SUBJ0001-02-MPRAGE.nii.gz
inst/Kirby21/SUBJ0001-02-MPRAGE_N3_REG.nii.gz
inst/Kirby21/SUBJ0001_mask.nii.gz
inst/Kirby21/SUBJ0002-01-MPRAGE_N3.nii.gz
inst/Presentation/Beamer_Presentation/Modalities.png
inst/Presentation/Beamer_Presentation/Presentation.aux
inst/Presentation/Beamer_Presentation/Presentation.log
inst/Presentation/Beamer_Presentation/Presentation.nav
inst/Presentation/Beamer_Presentation/Presentation.out
inst/Presentation/Beamer_Presentation/Presentation.pdf
inst/Presentation/Beamer_Presentation/Presentation.snm
inst/Presentation/Beamer_Presentation/Presentation.synctex.gz
inst/Presentation/Beamer_Presentation/Presentation.tex
inst/Presentation/Beamer_Presentation/Presentation.toc
inst/Presentation/Beamer_Presentation/sequences.png
inst/Presentation/Beamer_Presentation/sequences2.png
inst/Presentation/Beamer_Presentation/subtraction.png
inst/Presentation/Beamer_Presentation/template.png
inst/Presentation/DICOM_Directory.png
inst/Presentation/ENAR_SC_2015_Presentation.pptx
inst/Presentation/fsl_pres.pptx
inst/Presentation/movie_final.gif
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inst/Template/MNI152_T1_1mm.nii.gz
inst/Template/MNI152_T1_1mm_brain.nii.gz
inst/Template/MNI152_T1_1mm_brain_rotate.nii.gz
inst/Template/MNI152_T1_2mm_brain.nii.gz
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inst/doc/ANTsR_pipeline.html
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makefile
man/ENARSC2015-package.Rd man/ants_pipeline.Rd man/bias_correct.Rd man/copy_data.Rd man/dcm2nii.Rd man/fsl_pipeline.Rd man/hoxsubcort.df.Rd man/hoxsubcort.img.Rd vignettes/DICOM_to_NIfTI.Rmd vignettes/Pipeline_Comparison.Rmd
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vignettes/Pipeline_Comparison_files/figure-html/ortho_n3-2.png
vignettes/Pipeline_Comparison_files/figure-html/ortho_n3-3.png
vignettes/Pipeline_Comparison_files/figure-html/plot_reg-1.png
vignettes/Pipeline_Comparison_files/figure-html/plot_reg-2.png
vignettes/WebGL/CanvasMatrix.js
vignettes/WebGL/index.html
vignettes/WebGL/snapshot.png
muschellij2/ENARSC2015 documentation built on May 22, 2017, 4:25 p.m.