whitestripe_ind_to_mask: WhiteStripe Indices to Mask

In muschellij2/WhiteStripe: White Matter Normalization for Magnetic Resonance Images

WhiteStripe Indices to Mask

Description

Uses WhiteStripe indices to create image mask

Usage

whitestripe_ind_to_mask(img, indices, writeimg = FALSE, ...)

Arguments

img	Array or class nifti that is corresponds to dimensions of the images the indices were generated from
indices	indices from whitestripe
writeimg	logical to write image or not
...	arguments to passed to writeNIfTI for writing image

Value

Class of array or nifti depending on img input

See Also

whitestripe, whitestripe_hybrid

Examples

lib.loc = tempdir()
if (download_img_data(lib.loc = lib.loc)){
  t1 = oro.nifti::readNIfTI(system.file("T1Strip.nii.gz",
                                        package="WhiteStripe",
                                        lib.loc = lib.loc))
  t2 = oro.nifti::readNIfTI(system.file("T2Strip.nii.gz",
                                        package="WhiteStripe",
                                        lib.loc = lib.loc))
  ind = whitestripe_hybrid(t1, t2)
  mask = whitestripe_ind_to_mask(t1, ind$whitestripe.ind)
  oro.nifti::orthographic(mask)
}

muschellij2/WhiteStripe documentation built on May 10, 2024, 1:31 a.m.