mri_convert: Use Freesurfers MRI Converter

In muschellij2/freesurfer: Wrapper Functions for 'Freesurfer'

Use Freesurfers MRI Converter

Description

This function calls mri_convert to convert an image

Usage

mri_convert(file, outfile, opts = "")

Arguments

file	(character) input filename
outfile	(character) output filename
opts	(character) additional options to mri_convert

Value

Result of system command

Examples

if (have_fs() && requireNamespace("oro.nifti", quietly = TRUE)) {
   img = oro.nifti::nifti(array(rnorm(5*5*5), dim = c(5,5,5))) 
   res = mri_convert(img, outfile = tempfile(fileext = ".mgz"))
} 

muschellij2/freesurfer documentation built on Nov. 28, 2023, 4:45 a.m.