Man pages for muschellij2/freesurfer
Wrapper Functions for 'Freesurfer'

aparcstats2tableParcellation Stats to Table
aparcstats2table.helpParcellation Stats to Table Help
aparcs_to_bgConvert Freesurfer aparcs Table to brainGraph
asegstats2tableParcellation Stats to Table
asegstats2table.helpParcellation Stats to Table Help
check_fs_resultCheck Freesurfer Result
checkmnc-methodsForce object to filename with .mnc extension
construct_subj_dirConstruct Subject Directory
convert_surfaceConvert Freesurfer Surface
freesurferdirGet Freesurfer's Directory
freesurfer_read3Freesurfer Read 3 records
freesurfer_read3_conFreesurfer Read 3 records
freesurfer_read_curvRead Freesufer Curv file
freesurfer_read_surfRead Freesurfer Surface file
fs_cmdFS Command Wrapper
fs_helpWrapper for getting Freesurfer help
fs_imgextDetermine extension of image based on FSLOUTPUTTYPE
fs_lutFreesurfer look up table (LUT)
fs_subj_dirDetermine Freesurfer Subjects Directory
fs_versionFind Freesurfer Version
get_fsCreate command declaring FREESURFER_HOME
get_fs_outputDetermine Freesurfer output type
have_fsLogical check if Freesurfer is accessible
mnc2niiConvert MNC to NIfTI
mnc2nii.helpMNC to NIfTI Help
mri_convertUse Freesurfers MRI Converter
mri_convert.helpMRI Normalize Help
mri_infoMRI information
mri_info.helpMRI information Help
mri_maskUse Freesurfers MRI Mask
mri_mask.helpMRI Normalize Help
mri_normalizeUse Freesurfers MRI Normalize Algorithm
mri_normalize.helpMRI Normalize Help
mris_convertUse Freesurfers MRIs Converter
mris_convert_annotConvert Annotation file
mris_convert_curvConvert Curvature file
mris_convert.helpHelp file for Freesurfers MRIs Converter
mris_convert_normalsConvert Surface to Surface normals
mris_convert_vertexConvert Surface to vertex file
mri_segmentUse Freesurfers MRI Segmentation Algorithm
mri_segment.helpMRI Segment Help
mris_euler_numberMRI Euler Number
mris_euler_number.helpMRI Euler Number Help
mri_surf2surfUse Freesurfers 'mri_surf2surf' function to resamples one...
mri_surf2surf.helpFreesurfers mri_surf2surf Help
mri_watershedUse Freesurfers MRI Watershed Algorithm
mri_watershed.helpMRI Watershed Help
nii2mncConvert NIfTI to MNC
nii2mnc.helpConvert NIfTI to MNC Help
nu_correctUse Freesurfers Non-Uniformity Correction
nu_correct.helpNon-Uniformity Correction Help
read_aseg_statsRead Anatomical Segmentation Statistics
read_fs_labelRead Label File
read_fs_tableRead Freesurfer Table Output
readmgzRead MGH or MGZ File
readmncRead MNC File
reconReconstruction from Freesurfer
recon_allReconstruction from Freesurfer for All Steps
recon_manualReconstruction from Motion Correction to Skull Strip
reconnerReconstruction Helper for recon from Freesurfer
run_check_fs_cmdRun and Check a Freesurfer Command
set_fs_subj_dirSet Freesurfer Subjects Directory
surface_to_objConvert Freesurfer Surface to Wavefront OBJ
surface_to_trianglesConvert Freesurfer Surface to Triangles
surf_convertConvert Surface Data to ASCII
trac_allTract Reconstruction Helper for trac-all from Freesurfer for...
trackerTract Reconstruction Helper for trac-all from Freesurfer
trac_manualTract Reconstruction for Each Step
muschellij2/freesurfer documentation built on May 12, 2018, 7 a.m.