read_fs_table: Read Freesurfer Table Output

In muschellij2/freesurfer: Wrapper Functions for 'Freesurfer'

Read Freesurfer Table Output

Description

This function reads output from a Freesurfer table command, e.g. aparcstats2table, asegstats2table

Usage

read_fs_table(file, sep = NULL, stringsAsFactors = FALSE, header = TRUE, ...)

Arguments

file	(character path) filename of text file
sep	separator to override attribute of file, to pass to read.table.
stringsAsFactors	(logical) passed to read.table
header	Is there a header in the data
...	additional arguments to read.table

Value

data.frame from the file

Examples

if (have_fs()) {
   outfile = aparcstats2table(subjects = "bert",
                    hemi = "lh",
                    meas = "thickness")
   df = read_fs_table(outfile)
   seg_outfile = asegstats2table(subjects = "bert", meas = "mean")
   df_seg = read_fs_table(seg_outfile)
}
## Not run: 
### using the pipe
if (requireNamespace("magrittr", quietly = TRUE)) {
df_seg = asegstats2table(subjects = "bert", meas = "mean") %>% 
            read_fs_table
            }

## End(Not run)

muschellij2/freesurfer documentation built on Nov. 28, 2023, 4:45 a.m.