recon_all: Reconstruction from Freesurfer for All Steps

In muschellij2/freesurfer: Wrapper Functions for 'Freesurfer'

Reconstruction from Freesurfer for All Steps

Description

Reconstruction from Freesurfer for All Steps

Usage

recon_all(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  ...
)

Arguments

infile	Input filename (dcm or nii)
outdir	Output directory
subjid	subject id
verbose	print diagnostic messages
opts	Additional options
...	arguments passed to reconner

Value

Result of system

Note

If you would like to restart a recon-all run, change opts so that opts = "-make all"

muschellij2/freesurfer documentation built on Nov. 28, 2023, 4:45 a.m.